STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Trad_0820Protein of unknown function DUF1999; InterPro IPR018987; KEGG: ttj:TTHA1254 hypothetical protein; PFAM: Protein of unknown function DUF1999; SPTR: Q72J89 Fe-S binding reductase, putative; PFAM: Protein of unknown function (DUF1999). (147 aa)    
Predicted Functional Partners:
Trad_0819
Protein of unknown function DUF503; COGs: COG1550 conserved hypothetical protein; InterPro IPR007546; KEGG: dra:DR_1478 hypothetical protein; PFAM: protein of unknown function DUF503; SPTR: Q9RUB3 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF503).
       0.837
Trad_0821
COGs: COG0315 Molybdenum cofactor biosynthesis enzyme; InterPro IPR002820; KEGG: ttj:TTHA1789 molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; SPTR: B7A992 Molybdenum cofactor biosynthesis protein C; TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: MoaC family; TIGRFAM: molybdenum cofactor biosynthesis protein MoaC.
       0.773
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
       0.773
Trad_0823
InterPro IPR000326:IPR016118; KEGG: hau:Haur_4970 phosphoesterase PA-phosphatase related; PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; SPTR: C1XUY7 PAP2 superfamily protein; PFAM: PAP2 superfamily.
       0.773
Trad_0817
DAK2 domain fusion protein YloV; COGs: COG1461 kinase related to dihydroxyacetone kinase; InterPro IPR019986:IPR004007; KEGG: ddr:Deide_17580 putative Dak phosphatase; PFAM: Dak phosphatase; SPTR: C1XV24 Predicted kinase, dihydroxyacetone kinase; TIGRFAM: DAK2 domain fusion protein YloV; PFAM: DAK2 domain; TIGRFAM: DAK2 domain fusion protein YloV.
       0.483
Trad_0818
Protein of unknown function DUF322; COGs: COG1302 conserved hypothetical protein; InterPro IPR005531; KEGG: dge:Dgeo_1721 hypothetical protein; PFAM: protein of unknown function DUF322; SPTR: B7AC20 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF322).
       0.483
Your Current Organism:
Truepera radiovictrix
NCBI taxonomy Id: 649638
Other names: T. radiovictrix DSM 17093, Truepera radiovictrix DSM 17093, Truepera radiovictrix RQ-24, Truepera radiovictrix str. DSM 17093, Truepera radiovictrix strain DSM 17093
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