STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
truAtRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. (260 aa)    
Predicted Functional Partners:
rplQ
COGs: COG0203 Ribosomal protein L17; InterPro IPR000456; KEGG: ddr:Deide_18620 putative 50S ribosomal protein L17; PFAM: ribosomal protein L17; SPTR: C1CXD3 50S ribosomal protein L17; TIGRFAM: ribosomal protein L17; PFAM: Ribosomal protein L17; TIGRFAM: ribosomal protein L17.
 
  
 0.939
Trad_1242
Rhodanese domain protein; COGs: COG0491 Zn-dependent hydrolase including glyoxylase; InterPro IPR001307:IPR001763; KEGG: rxy:Rxyl_1619 beta-lactamase-like protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; SPTR: Q1AVJ8 Beta-lactamase-like protein; PFAM: Metallo-beta-lactamase superfamily; Rhodanese-like domain.
   
 
 0.904
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
  
 0.892
tilS
tRNA(Ile)-lysidine synthetase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
 
 
 0.846
Trad_0821
COGs: COG0315 Molybdenum cofactor biosynthesis enzyme; InterPro IPR002820; KEGG: ttj:TTHA1789 molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; SPTR: B7A992 Molybdenum cofactor biosynthesis protein C; TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: MoaC family; TIGRFAM: molybdenum cofactor biosynthesis protein MoaC.
     
 0.832
Trad_0823
InterPro IPR000326:IPR016118; KEGG: hau:Haur_4970 phosphoesterase PA-phosphatase related; PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; SPTR: C1XUY7 PAP2 superfamily protein; PFAM: PAP2 superfamily.
       0.781
Trad_0819
Protein of unknown function DUF503; COGs: COG1550 conserved hypothetical protein; InterPro IPR007546; KEGG: dra:DR_1478 hypothetical protein; PFAM: protein of unknown function DUF503; SPTR: Q9RUB3 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF503).
       0.773
Trad_0820
Protein of unknown function DUF1999; InterPro IPR018987; KEGG: ttj:TTHA1254 hypothetical protein; PFAM: Protein of unknown function DUF1999; SPTR: Q72J89 Fe-S binding reductase, putative; PFAM: Protein of unknown function (DUF1999).
       0.773
truB
tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.
  
 
 0.746
accD
acetyl-CoA carboxylase, carboxyl transferase, beta subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family.
 
  
 0.717
Your Current Organism:
Truepera radiovictrix
NCBI taxonomy Id: 649638
Other names: T. radiovictrix DSM 17093, Truepera radiovictrix DSM 17093, Truepera radiovictrix RQ-24, Truepera radiovictrix str. DSM 17093, Truepera radiovictrix strain DSM 17093
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