STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Trad_0857Periplasmic solute binding protein; COGs: COG0803 ABC-type metal ion transport system periplasmic component/surface adhesin; InterPro IPR006127:IPR006128; KEGG: rxy:Rxyl_1141 periplasmic solute binding protein; PFAM: periplasmic solute binding protein; SPTR: Q1AWX1 Periplasmic solute binding protein; PFAM: Periplasmic solute binding protein family; Belongs to the bacterial solute-binding protein 9 family. (300 aa)    
Predicted Functional Partners:
Trad_0858
ABC transporter related protein; COGs: COG1121 ABC-type Mn/Zn transport systems ATPase component; InterPro IPR003593:IPR003439:IPR017871; KEGG: ttj:TTHA0453 Mn2+/Zn2+ ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C1XUH4 ATPase component of Mn/Zn ABC-type transporter; PFAM: ABC transporter.
 
 
 0.993
Trad_0859
ABC-3 protein; COGs: COG1108 ABC-type Mn2+/Zn2+ transport systems permease components; InterPro IPR001626; KEGG: ttj:TTHA0454 Mn2+/Zn2+ ABC transporter, permease protein; PFAM: ABC-3 protein; SPTR: C1XK44 ABC-type Mn2+/Zn2+ transport system, permease component; PFAM: ABC 3 transport family.
  
 0.948
Trad_0768
ABC transporter related protein; COGs: COG1121 ABC-type Mn/Zn transport systems ATPase component; InterPro IPR003593:IPR003439:IPR017871; KEGG: aeh:Mlg_1042 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Q0A9U2 ABC transporter related; PFAM: ABC transporter.
 
  
 0.927
Trad_0769
ABC-3 protein; COGs: COG1108 ABC-type Mn2+/Zn2+ transport systems permease components; InterPro IPR001626; KEGG: aeh:Mlg_1043 ABC-3 protein; PFAM: ABC-3 protein; SPTR: Q0A9U1 ABC-3 protein; PFAM: ABC 3 transport family.
 
  
 0.906
Trad_0856
Ribosomal protein L28; InterPro IPR001383; KEGG: ddr:Deide_07340 putative 50S ribosomal protein L28; PFAM: ribosomal protein L28; SPTR: C1D168 Putative 50S ribosomal protein L28; TIGRFAM: ribosomal protein L28; PFAM: Ribosomal L28 family; TIGRFAM: ribosomal protein L28.
  
  
 0.801
Trad_0854
Cobalamin synthesis protein P47K; COGs: COG0523 Putative GTPase (G3E family); InterPro IPR003495:IPR011629; KEGG: ddr:Deide_00450 putative cobalamin synthesis protein, P47K; PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; SPTR: C1XQL9 Predicted GTPase, G3E family; PFAM: CobW/HypB/UreG, nucleotide-binding domain; Cobalamin synthesis protein cobW C-terminal domain.
  
  
 0.696
Trad_2704
Iron (metal) dependent repressor, DtxR family; COGs: COG1321 Mn-dependent transcriptional regulator protein; InterPro IPR001367:IPR007167:IPR008988; KEGG: sti:Sthe_1384 iron (metal) dependent repressor, DtxR family; PFAM: FeoA family protein; iron dependent repressor; SMART: iron dependent repressor; SPTR: D1C3K2 Iron (Metal) dependent repressor, DtxR family; PFAM: FeoA domain; Iron dependent repressor, metal binding and dimerisation domain; Iron dependent repressor, N-terminal DNA binding domain.
  
  
 0.597
Trad_0496
KEGG: aeh:Mlg_1777 hypothetical protein; SPTR: Q0A7R4 Putative uncharacterized protein.
  
  
 0.580
Trad_0105
Cobalamin synthesis protein P47K; COGs: COG0523 Putative GTPase (G3E family); InterPro IPR003495:IPR011629; KEGG: rca:Rcas_2945 cobalamin synthesis protein P47K; PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; SPTR: A7NN74 Cobalamin synthesis protein P47K; PFAM: Cobalamin synthesis protein cobW C-terminal domain; CobW/HypB/UreG, nucleotide-binding domain.
  
  
 0.532
Trad_0855
YibE/F family protein; COGs: COG5438 multitransmembrane protein; InterPro IPR019780:IPR012507; KEGG: tth:TTC0924 hypothetical protein; PFAM: YibE/F family protein; SPTR: B7A9Z4 YibE/F family protein; PFAM: YibE/F-like protein.
       0.472
Your Current Organism:
Truepera radiovictrix
NCBI taxonomy Id: 649638
Other names: T. radiovictrix DSM 17093, Truepera radiovictrix DSM 17093, Truepera radiovictrix RQ-24, Truepera radiovictrix str. DSM 17093, Truepera radiovictrix strain DSM 17093
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