STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trmJRNA methyltransferase, TrmH family, group 1; Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA. (248 aa)    
Predicted Functional Partners:
cysS
COGs: COG0215 Cysteinyl-tRNA synthetase; InterProIPR015803:IPR015273:IPR014729:IPR009080:IPR 002308; KEGG: dge:Dgeo_1714 cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia; Cysteinyl-tRNA synthetase class Ia DALR; PRIAM: Cysteine--tRNA ligase; SPTR: C1XJI2 Cysteinyl-tRNA synthetase; TIGRFAM: cysteinyl-tRNA synthetase; PFAM: tRNA synthetases class I (C) catalytic domain; DALR domain; TIGRFAM: cysteinyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
      0.615
rnhB
Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
 
  
 0.559
Trad_0867
Oxidoreductase molybdopterin binding protein; COGs: COG2041 Sulfite oxidase; InterPro IPR000572; KEGG: ddr:Deide_17540 putative oxidoreductase molybdopterin binding; PFAM: oxidoreductase molybdopterin binding; SPTR: C1CX10 Putative oxidoreductase molybdopterin binding; PFAM: Oxidoreductase molybdopterin binding domain.
       0.554
Trad_0866
KEGG: eli:ELI_09660 DNA-binding protein; SPTR: C1YUV7 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3140).
       0.494
Trad_2617
Xylose isomerase domain protein TIM barrel; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307:IPR001719:IPR013022; KEGG: ttj:TTHA1934 hypothetical protein; PFAM: Xylose isomerase domain protein TIM barrel; SMART: AP endonuclease family 2; SPTR: Q5SGZ6 Putative uncharacterized protein TTHA1934; PFAM: Xylose isomerase-like TIM barrel.
  
     0.462
Your Current Organism:
Truepera radiovictrix
NCBI taxonomy Id: 649638
Other names: T. radiovictrix DSM 17093, Truepera radiovictrix DSM 17093, Truepera radiovictrix RQ-24, Truepera radiovictrix str. DSM 17093, Truepera radiovictrix strain DSM 17093
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