STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Trad_0895Peptidase M42 family protein; COGs: COG1363 Cellulase M and related protein; InterPro IPR008007; KEGG: ddr:Deide_00890 putative peptidase M42; PFAM: peptidase M42 family protein; SPTR: C1CXT3 Putative Peptidase M42; PFAM: M42 glutamyl aminopeptidase. (355 aa)    
Predicted Functional Partners:
Trad_0893
Oxidoreductase domain protein; COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR016040; KEGG: rca:Rcas_4405 oxidoreductase domain-containing protein; PFAM: oxidoreductase domain protein; SPTR: A7NS75 Oxidoreductase domain protein; PFAM: Oxidoreductase family, NAD-binding Rossmann fold.
       0.634
Trad_0894
Xylose isomerase domain protein TIM barrel; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307:IPR013022; KEGG: sml:Smlt1193 putative xylose isomerase family protein; PFAM: Xylose isomerase domain protein TIM barrel; SPTR: B2FSL7 Putative xylose isomerase family protein; PFAM: Xylose isomerase-like TIM barrel.
       0.634
Trad_0892
Type I phosphodiesterase/nucleotide pyrophosphatase; COGs: COG1524 Uncharacterized protein of the AP superfamily; InterPro IPR002591:IPR017849:IPR017850; KEGG: dge:Dgeo_2469 type I phosphodiesterase/nucleotide pyrophosphatase; PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; SPTR: Q1J3N1 Type I phosphodiesterase/nucleotide pyrophosphatase; PFAM: Type I phosphodiesterase / nucleotide pyrophosphatase.
       0.571
Trad_0891
InterPro IPR000537; KEGG: dge:Dgeo_2470 UbiA prenyltransferase; PFAM: UbiA prenyltransferase; SPTR: Q1J3N0 UbiA prenyltransferase; PFAM: UbiA prenyltransferase family.
       0.519
Your Current Organism:
Truepera radiovictrix
NCBI taxonomy Id: 649638
Other names: T. radiovictrix DSM 17093, Truepera radiovictrix DSM 17093, Truepera radiovictrix RQ-24, Truepera radiovictrix str. DSM 17093, Truepera radiovictrix strain DSM 17093
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.