STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Trad_0917Transcriptional regulator, IclR family; COGs: COG1414 Transcriptional regulator; InterPro IPR005471:IPR014757; KEGG: dra:DR_1217 IclR family transcriptional regulator; PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; SPTR: Q9RV13 Transcriptional regulator, IclR family; PFAM: IclR helix-turn-helix domain; Bacterial transcriptional regulator. (247 aa)    
Predicted Functional Partners:
Trad_1527
COGs: COG1984 Allophanate hydrolase subunit 2; InterPro IPR003833:IPR003778; KEGG: tth:TTC0624 UreA carboxylase/allophanate hydrolase; PFAM: Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; SMART: Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; SPTR: C1XT67 Putative uncharacterized protein; PFAM: Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; TIGRFAM: conserved hypothetical protein TIGR00370; biotin-dependent carboxylase uncharacterized domain.
  
    0.973
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
     
 0.634
hutI
COGs: COG1228 Imidazolonepropionase and related amidohydrolase; InterPro IPR005920:IPR011059:IPR006680; KEGG: dra:DR_A0148 imidazolonepropionase; PFAM: amidohydrolase; PRIAM: Imidazolonepropionase; SPTR: Q9RZ05 Imidazolonepropionase; TIGRFAM: imidazolonepropionase; PFAM: Amidohydrolase family; TIGRFAM: imidazolonepropionase.
     
 0.603
Trad_0915
Arginase/agmatinase/formiminoglutamase; COGs: COG0010 Arginase/agmatinase/formimionoglutamate hydrolase arginase family; InterPro IPR006035; KEGG: dge:Dgeo_2732 arginase/agmatinase/formiminoglutamase; PFAM: Arginase/agmatinase/formiminoglutamase; SPTR: Q1J2W9 Arginase/agmatinase/formiminoglutamase; PFAM: Arginase family; TIGRFAM: agmatinase; Belongs to the arginase family.
  
  
 0.600
hutH
COGs: COG2986 Histidine ammonia-lyase; InterPro IPR005921:IPR008948:IPR001106; KEGG: dge:Dgeo_2730 histidine ammonia-lyase; PFAM: phenylalanine/histidine ammonia-lyase; PRIAM: Histidine ammonia-lyase; SPTR: Q1J2X1 Histidine ammonia-lyase; TIGRFAM: histidine ammonia-lyase; PFAM: Phenylalanine and histidine ammonia-lyase; TIGRFAM: histidine ammonia-lyase.
     
 0.562
Trad_0913
Nucleoside recognition domain protein; COGs: COG3314 conserved hypothetical protein; InterPro IPR011642; KEGG: asa:ASA_2086 transmembrane protein; PFAM: nucleoside recognition domain protein; SPTR: A4SMN0 Conserved transmembrane protein; PFAM: Nucleoside recognition.
       0.550
Trad_2142
Protein of unknown function DUF718; COGs: COG3254 conserved hypothetical protein; InterPro IPR008000; KEGG: chl:Chy400_2462 protein of unknown function DUF718; PFAM: protein of unknown function DUF718; SPTR: B9LIR2 Putative uncharacterized protein; PFAM: Domain of unknown function (DUF718).
 
  
 0.540
Trad_0666
TRAP dicarboxylate transporter, DctM subunit; COGs: COG1593 TRAP-type C4-dicarboxylate transport system large permease component; InterPro IPR004681:IPR007387:IPR010656; KEGG: tnp:Tnap_0219 TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; Tripartite ATP-independent periplasmic transporter DctQ component; SPTR: B9KBL5 TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: DctM-like transporters; Tripartite ATP-independent periplasmic transporters, DctQ component; TIGRFAM: [...]
 
   
 0.512
pxpA
LamB/YcsF family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
  
    0.483
Trad_1887
3,4-dihydroxyphenylacetate 2,3-dioxygenase; InterPro IPR011981:IPR004360:IPR000486; KEGG: rlt:Rleg2_4442 3,4-dihydroxyphenylacetate 2,3-dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: A0NXR6 Extradiol ring-cleavage dioxygenase:Glyoxalase/Bleomycin resistance protein/dioxygenase domain:Glyoxalase I; TIGRFAM: 3,4-dihydroxyphenylacetate 2,3-dioxygenase; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; TIGRFAM: 3,4-dihydroxyphenylacetate 2,3-dioxygenase.
 
  
 0.466
Your Current Organism:
Truepera radiovictrix
NCBI taxonomy Id: 649638
Other names: T. radiovictrix DSM 17093, Truepera radiovictrix DSM 17093, Truepera radiovictrix RQ-24, Truepera radiovictrix str. DSM 17093, Truepera radiovictrix strain DSM 17093
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