STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Trad_0980Kelch repeat-containing protein; COGs: COG3055 conserved hypothetical protein; InterPro IPR006652:IPR015915:IPR011043; KEGG: gvi:gll3206 hypothetical protein; PFAM: Kelch repeat-containing protein; SMART: Kelch repeat-containing protein; SPTR: Q7NGG3 Gll3206 protein; PFAM: Kelch motif. (354 aa)    
Predicted Functional Partners:
Trad_2882
Hypothetical protein; InterPro IPR019825:IPR011042:IPR011041; KEGG: dge:Dgeo_2672 glycosy hydrolase family protein; SPTR: Q1J329 Glycosyl hydrolase family 98, carbohydrate binding module.
     0.678
Trad_1254
Protein of unknown function DUF1080; InterPro IPR010496; KEGG: dge:Dgeo_2670 glycosy hydrolase family protein; PFAM: protein of unknown function DUF1080; SPTR: Q1J331 Glycosyl hydrolase family 98, putative carbohydrate binding module; PFAM: Domain of Unknown Function (DUF1080).
     0.580
Trad_0981
Hypothetical protein; KEGG: bbt:BBta_0983 major facilitator superfamily permease; SPTR: B5G9J7 Predicted protein.
       0.554
Trad_2883
KEGG: gvi:gll0046 hypothetical protein; SPTR: Q7NPK9 Gll0046 protein.
 
     0.478
Trad_0535
KEGG: hau:Haur_3008 hypothetical protein; SPTR: A9B4S3 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3105).
  
     0.435
Trad_0979
O-antigen polymerase; InterPro IPR007016; KEGG: tth:TTC1837 hypothetical protein; PFAM: O-antigen polymerase; SPTR: C1XSE4 Putative uncharacterized protein; PFAM: O-Antigen ligase.
       0.406
Your Current Organism:
Truepera radiovictrix
NCBI taxonomy Id: 649638
Other names: T. radiovictrix DSM 17093, Truepera radiovictrix DSM 17093, Truepera radiovictrix RQ-24, Truepera radiovictrix str. DSM 17093, Truepera radiovictrix strain DSM 17093
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.