Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Trad_1007Hypothetical protein; KEGG: bcj:BCAM2169 putative outer membrane autotransporter; SPTR: B4EFW6 Putative outer membrane autotransporter. (675 aa)    
Predicted Functional Partners:
Trad_1008
Permease YjgP/YjgQ family protein; COGs: COG0795 permease; InterPro IPR005495; KEGG: ttj:TTHA1108 hypothetical protein; PFAM: permease YjgP/YjgQ family protein; SPTR: C1XVZ4 Predicted permease; PFAM: Predicted permease YjgP/YjgQ family.
       0.701
Trad_1006
KEGG: tth:TTC0743 hypothetical protein; SPTR: C1XIC0 Putative uncharacterized protein.
       0.603
Trad_1004
Peptidase M16 domain protein; COGs: COG0612 Zn-dependent peptidase; InterPro IPR011237:IPR011249:IPR011765:IPR007863; KEGG: ttj:TTHA1265 zinc-dependent peptidase; PFAM: peptidase M16 domain protein; SPTR: C1XID7 Predicted Zn-dependent peptidase; PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase family M16).
       0.457
Trad_1005
Peptidase M16 domain protein; COGs: COG0612 Zn-dependent peptidase; InterProIPR011237:IPR011249:IPR001431:IPR011765:IPR 007863; KEGG: tth:TTC0900 zinc protease; PFAM: peptidase M16 domain protein; SPTR: C1XID8 Predicted Zn-dependent peptidase; PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase family M16); Belongs to the peptidase M16 family.
       0.457
Your Current Organism:
Truepera radiovictrix
NCBI taxonomy Id: 649638
Other names: T. radiovictrix DSM 17093, Truepera radiovictrix DSM 17093, Truepera radiovictrix RQ-24, Truepera radiovictrix str. DSM 17093, Truepera radiovictrix strain DSM 17093
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