STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Trad_1109COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: tro:trd_1593 dTDP-Rha:a-D-GlcNAc-diphosphoryl polyprenol, A-3-L-rhamnosyl transferase; PFAM: glycosyl transferase family 2; SPTR: C1XIU9 Predicted glycosyltransferase; PFAM: Glycosyl transferase family 2. (313 aa)    
Predicted Functional Partners:
Trad_2857
COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: gem:GM21_1643 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; SPTR: C6MNA5 Glycosyl transferase family 2; PFAM: Glycosyl transferase family 2.
  
     0.768
Trad_2864
Undecaprenyl-phosphate galactose phosphotransferase, WbaP; COGs: COG2148 Sugar transferase involved in lipopolysaccharide synthesis; InterProIPR017472:IPR017475:IPR007016:IPR003362:IPR 016040; KEGG: dge:Dgeo_0343 undecaprenyl-phosphate galactosephosphotransferase; PFAM: sugar transferase; O-antigen polymerase; PRIAM: Undecaprenyl-phosphate galactose phosphotransferase; SPTR: C1XIW2 Undecaprenyl-phosphate galactose phosphotransferase, WbaP/exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; TIGRFAM: Undecaprenyl-phosphate galactose phosphotransferase, WbaP; exopolysacc [...]
  
  
 0.751
Trad_1564
COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: cac:CAC2171 glycosyltransferase; PFAM: glycosyl transferase family 2; SPTR: Q97H42 Predicted glycosyltransferase; PFAM: Glycosyl transferase family 2.
  
     0.737
Trad_2867
NAD-dependent epimerase/dehydratase; COGs: COG1091 dTDP-4-dehydrorhamnose reductase; InterPro IPR016040:IPR001509; KEGG: dra:DR_A0044 dTDP-4-rhamnose reductase-related protein; PFAM: NAD-dependent epimerase/dehydratase; SPTR: C1XU04 dTDP-4-dehydrorhamnose reductase; PFAM: RmlD substrate binding domain; TIGRFAM: dTDP-4-dehydrorhamnose reductase.
 
  
 0.608
Trad_2868
dTDP-4-dehydrorhamnose 35-epimerase related protein; COGs: COG1898 dTDP-4-dehydrorhamnose 3 5-epimerase; InterPro IPR000888:IPR014710:IPR011051; KEGG: dra:DR_A0043 lipopolysaccharide biosynthesis protein, putative; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; SPTR: C1XU05 dTDP-4-dehydrorhamnose 3,5-epimerase-like enzyme; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase.
 
  
 0.588
Trad_0431
CRISPR-associated protein, TIGR02710 family; InterPro IPR014082; KEGG: ttj:TTHB144 hypothetical protein; PFAM: CRISPR-associated protein Cas02710; SPTR: C1XW86 CRISPR-associated protein, TIGR02710 family; TIGRFAM: CRISPR-associated protein, TIGR02710 family; PFAM: CRISPR-associated protein (Cas_Cas02710); TIGRFAM: CRISPR-associated protein, TIGR02710 family.
 
    0.566
Trad_1110
Patatin; COGs: COG1752 esterase of the alpha-beta hydrolase superfamily; InterPro IPR016035:IPR002641; KEGG: dau:Daud_1726 patatin; PFAM: Patatin; SPTR: B1I5C7 Patatin; PFAM: Patatin-like phospholipase.
       0.554
Trad_2815
COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: mxa:MXAN_7448 glycosyl transferase, group 2 family protein; PFAM: glycosyl transferase family 2; SPTR: C1XG84 Predicted glycosyltransferase; PFAM: Glycosyl transferase family 2.
  
     0.429
Your Current Organism:
Truepera radiovictrix
NCBI taxonomy Id: 649638
Other names: T. radiovictrix DSM 17093, Truepera radiovictrix DSM 17093, Truepera radiovictrix RQ-24, Truepera radiovictrix str. DSM 17093, Truepera radiovictrix strain DSM 17093
Server load: low (30%) [HD]