STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Trad_1124PKD domain containing protein; COGs: COG2133 Glucose/sorbosone dehydrogenase; InterPro IPR000601:IPR011042:IPR011041:IPR016160; KEGG: hau:Haur_1249 PKD domain-containing protein; PFAM: PKD domain containing protein; SMART: PKD domain containing protein; SPTR: C1RME6 Glucose/sorbosone dehydrogenase; PFAM: Glucose / Sorbosone dehydrogenase; PKD domain. (824 aa)    
Predicted Functional Partners:
Trad_1125
COGs: COG0667 oxidoreductase (related to aryl-alcohol dehydrogenase); InterPro IPR001395:IPR020471; KEGG: ddr:Deide_07880 putative oxidoreductase; PFAM: aldo/keto reductase; SPTR: C1D1C8 Putative oxidoreductase; PFAM: Aldo/keto reductase family.
       0.549
Trad_1126
Abortive infection protein; InterPro IPR003675; KEGG: rrs:RoseRS_1918 abortive infection protein; PFAM: Abortive infection protein; SPTR: A5UUK4 Abortive infection protein; PFAM: CAAX amino terminal protease family.
  
    0.515
Trad_1875
TatD-related deoxyribonuclease; COGs: COG1099 metal-dependent hydrolase with the TIM-barrel fold; InterPro IPR012022:IPR001130; KEGG: dge:Dgeo_2472 TatD-related deoxyribonuclease; PFAM: TatD-related deoxyribonuclease; SPTR: Q1J3M8 TatD-related deoxyribonuclease; PFAM: TatD related DNase.
 
     0.483
Trad_1123
Thioesterase superfamily protein; COGs: COG2050 Uncharacterized protein possibly involved in aromatic compounds catabolism; InterPro IPR003736:IPR006683; KEGG: psa:PST_0538 hypothetical protein; PFAM: thioesterase superfamily protein; SPTR: A4VGZ3 Putative uncharacterized protein; PFAM: Thioesterase superfamily; TIGRFAM: uncharacterized domain 1.
       0.428
Trad_0896
Kelch repeat-containing protein; InterPro IPR006652:IPR015915:IPR011043; KEGG: dge:Dgeo_2670 glycosy hydrolase family protein; PFAM: Kelch repeat-containing protein; SMART: Kelch repeat-containing protein; SPTR: Q1J331 Glycosyl hydrolase family 98, putative carbohydrate binding module; PFAM: Kelch motif.
 
     0.416
Trad_0891
InterPro IPR000537; KEGG: dge:Dgeo_2470 UbiA prenyltransferase; PFAM: UbiA prenyltransferase; SPTR: Q1J3N0 UbiA prenyltransferase; PFAM: UbiA prenyltransferase family.
 
     0.412
Trad_1877
InterPro IPR012307; KEGG: dge:Dgeo_2471 hypothetical protein; PFAM: Xylose isomerase domain protein TIM barrel; SPTR: Q1J3M9 Sugar phosphate isomerase family enzyme.
 
  
 0.401
Your Current Organism:
Truepera radiovictrix
NCBI taxonomy Id: 649638
Other names: T. radiovictrix DSM 17093, Truepera radiovictrix DSM 17093, Truepera radiovictrix RQ-24, Truepera radiovictrix str. DSM 17093, Truepera radiovictrix strain DSM 17093
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.