STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
Trad_1204Amidase, hydantoinase/carbamoylase family; COGs: COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylase; InterPro IPR010158:IPR011650:IPR002933; KEGG: rxy:Rxyl_0221 amidase, hydantoinase/carbamoylase; PFAM: peptidase M20; PRIAM: N-carbamoyl-L-amino-acid hydrolase; SPTR: B9XKY3 Amidase, hydantoinase/carbamoylase family; TIGRFAM: amidase, hydantoinase/carbamoylase family; PFAM: Peptidase family M20/M25/M40; TIGRFAM: amidase, hydantoinase/carbamoylase family. (413 aa)    
Predicted Functional Partners:
Trad_0921
Dihydropyrimidinase; COGs: COG0044 Dihydroorotase and related cyclic amidohydrolase; InterPro IPR011778:IPR011059:IPR006680; KEGG: pjd:Pjdr2_4687 dihydropyrimidinase; PFAM: amidohydrolase; SPTR: C1XJ97 D-hydantoinase; TIGRFAM: dihydropyrimidinase; PFAM: Amidohydrolase family; TIGRFAM: D-hydantoinase; dihydroorotase, multifunctional complex type.
 
 
 0.945
Trad_1502
OHCU decarboxylase; COGs: COG3195 conserved hypothetical protein; InterPro IPR018020:IPR017580; KEGG: bgl:bglu_1g13130 chitooligosaccharide deacetylase; PFAM: Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase; SPTR: C5AEZ4 Chitooligosaccharide deacetylase; TIGRFAM: OHCU decarboxylase; PFAM: OHCU decarboxylase; TIGRFAM: OHCU decarboxylase.
   
 0.923
Trad_0920
COGs: COG0167 Dihydroorotate dehydrogenase; InterProIPR005720:IPR017896:IPR013785:IPR017900:IPR 012135:IPR001450; KEGG: sus:Acid_7660 dihydropyrimidine dehydrogenase; PFAM: dihydroorotate oxidase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; PRIAM: Dihydropyrimidine dehydrogenase (NADP(+)); SPTR: C1XQJ5 Dihydroorotate oxidase B, catalytic subunit; dihydropyrimidine dehydrogenase (NADP+); dihydrouracil dehydrogenase (NAD+); TIGRFAM: dihydroorotate dehydrogenase family protein; PFAM: Dihydroorotate dehydrogenase; TIGRFAM: dihydroorotate dehydrogenase (subfamily 1) family protein.
 
 0.873
Trad_1960
COGs: COG0160 4-aminobutyrate aminotransferase and related aminotransferase; InterPro IPR015424:IPR015421:IPR005814; KEGG: sus:Acid_7662 aminotransferase; PFAM: aminotransferase class-III; SPTR: Q01P59 Aminotransferase; PFAM: Aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
  0.813
Trad_0918
FAD-dependent pyridine nucleotide-disulfide oxidoreductase; COGs: COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductase; InterProIPR017896:IPR012285:IPR009051:IPR000759:IPR 013027; KEGG: gyc:GYMC61_2212 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: C1XJ95 Glutamate synthase (NADPH) small subunit; PFAM: Pyridine nucleotide-disulphide oxidoreductase.
  
 
  0.810
Trad_0840
COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterProIPR011408:IPR016160:IPR015590:IPR016162:IPR 016161; KEGG: gau:GAU_2061 putative aldehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; SPTR: C1A9C6 Putative aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase family; Belongs to the aldehyde dehydrogenase family.
   
  0.800
Trad_1203
Hypothetical protein; KEGG: HMGR; 3-hydroxy-3-methylglutaryl-coenzyme A reductase; K00021 3-hydroxy-3-methylglutaryl-CoA reductase; SPTR: C7S800 3-hydroxy-3-methylglutaryl-coenzyme A reductase.
       0.773
Trad_1506
Cupin 2 conserved barrel domain protein; COGs: COG3257 Uncharacterized protein possibly involved in glyoxylate utilization; InterPro IPR013096:IPR014710:IPR011051; KEGG: dge:Dgeo_2608 hypothetical protein; PFAM: Cupin 2 conserved barrel domain protein; SPTR: C1XTG8 Uncharacterized protein, possibly involved in glyoxylate utilization; PFAM: Cupin domain; TIGRFAM: putative allantoin catabolism protein.
 
    0.668
allB
Allantoinase; Catalyzes the conversion of allantoin (5-ureidohydantoin) to allantoic acid by hydrolytic cleavage of the five-member hydantoin ring; Belongs to the metallo-dependent hydrolases superfamily. Allantoinase family.
 
  
 0.517
Trad_1205
beta-Ig-H3/fasciclin; COGs: COG2335 Secreted and surface protein containing fasciclin-like repeats; InterPro IPR000782; KEGG: sru:SRU_0261 osteoblast specific factor 2-related protein; PFAM: beta-Ig-H3/fasciclin; SMART: beta-Ig-H3/fasciclin; SPTR: C1XW13 Secreted/surface protein with fasciclin-like repeats; PFAM: Fasciclin domain.
       0.492
Your Current Organism:
Truepera radiovictrix
NCBI taxonomy Id: 649638
Other names: T. radiovictrix DSM 17093, Truepera radiovictrix DSM 17093, Truepera radiovictrix RQ-24, Truepera radiovictrix str. DSM 17093, Truepera radiovictrix strain DSM 17093
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