STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Trad_1237Transcriptional regulator, DeoR family; COGs: COG1349 Transcriptional regulators of sugar metabolism; InterPro IPR001034:IPR014036:IPR011991:IPR000485; KEGG: mta:Moth_0608 GntR family transcriptional regulator; PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR; SPTR: C1XZA2 Transcriptional regulator of sugar metabolism; PFAM: Bacterial regulatory proteins, deoR family; DeoR-like helix-turn-helix domain. (266 aa)    
Predicted Functional Partners:
Trad_0500
1-phosphofructokinase; COGs: COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB); InterPro IPR008265:IPR002139:IPR011611:IPR017583; KEGG: mxa:MXAN_2372 6-phosphofructokinase; PFAM: PfkB domain protein; SPTR: Q1D9T1 6-phosphofructokinase; TIGRFAM: 1-phosphofructokinase; PFAM: pfkB family carbohydrate kinase; TIGRFAM: 1-phosphofructokinase.
 
  
 0.889
Trad_2623
GCN5-related N-acetyltransferase; COGs: COG1042 Acyl-CoA synthetase (NDP forming); InterProIPR011761:IPR000182:IPR003781:IPR013650:IPR 016181:IPR016040:IPR016102; KEGG: ami:Amir_1469 CoA-binding domain protein; PFAM: GCN5-related N-acetyltransferase; CoA-binding domain protein; ATP-grasp domain protein; SPTR: C1XWJ3 Acyl-CoA synthetase (NDP forming); PFAM: Acetyltransferase (GNAT) family.
    
   0.571
Trad_1238
Protein of unknown function DUF2243, membrane; COGs: COG4329 membrane protein; InterPro IPR018719; KEGG: avn:Avin_17490 hypothetical protein; PFAM: Protein of unknown function DUF2243, membrane; SPTR: C0UCZ2 Predicted membrane protein, COG4329; PFAM: Predicted membrane protein (DUF2243).
       0.532
Trad_1236
COGs: COG1879 ABC-type sugar transport system periplasmic component; KEGG: ttr:Tter_2690 sugar ABC transporter; SPTR: D1CIK7 Sugar ABC transporter; PFAM: family.
  
  
 0.530
Trad_1228
Myo-inositol catabolism IolB domain protein; COGs: COG3718 Uncharacterized protein involved in inositol metabolism; InterPro IPR010669:IPR011051; KEGG: hne:HNE_2185 myo-inositol catabolism protein IolB; PFAM: Myo-inositol catabolism IolB domain protein; SPTR: Q0C062 Myo-inositol catabolism protein IolB; PFAM: KduI/IolB family.
  
  
 0.529
Trad_1232
Thiamine pyrophosphate protein central region; COGs: COG3962 Acetolactate synthase; InterPro IPR000399:IPR012001:IPR012000:IPR011766; KEGG: ttr:Tter_1524 thiamine pyrophosphate protein central region; PFAM: thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; thiamine pyrophosphate protein domain protein TPP-binding; SPTR: C1XJU4 Acetolactate synthase; PFAM: Thiamine pyrophosphate enzyme, central domain; Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain.
  
  
 0.501
Trad_2793
3-oxoacyl-(acyl-carrier-protein) reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
    0.408
Trad_2963
Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; COGs: COG3347 conserved hypothetical protein; InterProIPR002347:IPR013454:IPR016040:IPR001303:IPR 002198; KEGG: cag:Cagg_3316 rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; PFAM: class II aldolase/adducin family protein; short-chain dehydrogenase/reductase SDR; SPTR: B8G8B0 Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; TIGRFAM: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; PFAM: Class II Aldolase and Adducin N-terminal domain; short chain dehydrogenase; TIGRFAM: rhamnulose-1-phosphate aldolase/alcohol dehy [...]
  
  
 0.406
Your Current Organism:
Truepera radiovictrix
NCBI taxonomy Id: 649638
Other names: T. radiovictrix DSM 17093, Truepera radiovictrix DSM 17093, Truepera radiovictrix RQ-24, Truepera radiovictrix str. DSM 17093, Truepera radiovictrix strain DSM 17093
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.