STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Trad_1330Type II and III secretion system protein; COGs: COG1450 Type II secretory pathway component PulD; InterPro IPR004845:IPR005644:IPR004846:IPR001775; KEGG: tth:TTC1017 competence protein PilQ; PFAM: type II and III secretion system protein; NolW domain protein; SPTR: C1XGT1 Type II secretory pathway, component PulD; PFAM: Bacterial type II/III secretion system short domain; Bacterial type II and III secretion system protein. (560 aa)    
Predicted Functional Partners:
Trad_1332
General secretion pathway protein M; InterPro IPR018247:IPR019677; KEGG: dge:Dgeo_1727 type IV pilus assembly protein PilO; PFAM: General secretion pathway protein M; SPTR: C1XGT3 Putative uncharacterized protein; PFAM: Pilus assembly protein, PilO; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence.
 
   
 0.885
Trad_1334
COGs: COG4972 Tfp pilus assembly protein ATPase PilM; InterPro IPR005883; KEGG: dge:Dgeo_1725 type IV pilus assembly protein PilM; SPTR: Q1IXL4 Type IV pilus assembly protein PilM; TIGRFAM: type IV pilus assembly protein PilM; PFAM: Competence protein A; Cell division protein FtsA; TIGRFAM: cell division protein FtsA; type IV pilus assembly protein PilM.
 
  
 0.881
Trad_1333
Fimbrial assembly family protein; InterPro IPR007813; KEGG: tth:TTC1014 competence protein PilN; PFAM: Fimbrial assembly family protein; SPTR: Q72IW7 Competence protein pilN; PFAM: Fimbrial assembly protein (PilN).
     
 0.808
Trad_0152
KEGG: bha:BH0735 hypothetical protein; SPTR: Q9KEW4 BH0735 protein.
  
  
 0.733
Trad_1331
KEGG: bja:blr0521 hypothetical protein; SPTR: Q89X06 Blr0521 protein.
       0.732
Trad_2338
COGs: COG2804 Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB; InterPro IPR007831:IPR001482; KEGG: dge:Dgeo_0263 type II secretion system protein E; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SPTR: C1XNT4 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB; PFAM: GSPII_E N-terminal domain; Type II/IV secretion system protein.
 
  
 0.720
Trad_0315
UDP-3-0-acyl N-acetylglucosamine deacetylase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis. Belongs to the LpxC family.
  
     0.715
Trad_2383
MotA/TolQ/ExbB proton channel; COGs: COG0811 Biopolymer transport protein; InterPro IPR002898; KEGG: pca:Pcar_1505 MotA/TolQ/ExbB proton channel family protein; PFAM: MotA/TolQ/ExbB proton channel; SPTR: B8KGU3 MotA/TolQ/ExbB proton channel; PFAM: MotA/TolQ/ExbB proton channel family.
  
    0.706
Trad_2659
Surface antigen (D15); COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR010827:IPR000184; KEGG: ttj:TTHA0561 outer membrane protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; SPTR: C1XJV5 Outer membrane protein/protective antigen OMA87; PFAM: Surface antigen variable number repeat; Surface antigen.
  
   
 0.704
lpxD
UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase; Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3- hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. Belongs to the transferase hexapeptide repeat family. LpxD subfamily.
  
     0.698
Your Current Organism:
Truepera radiovictrix
NCBI taxonomy Id: 649638
Other names: T. radiovictrix DSM 17093, Truepera radiovictrix DSM 17093, Truepera radiovictrix RQ-24, Truepera radiovictrix str. DSM 17093, Truepera radiovictrix strain DSM 17093
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.