STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Trad_1486Inner-membrane translocator; COGs: COG4214 ABC-type xylose transport system permease component; InterPro IPR001851; KEGG: vap:Vapar_1047 inner-membrane translocator; PFAM: inner-membrane translocator; SPTR: C5CPH7 Inner-membrane translocator; PFAM: Branched-chain amino acid transport system / permease component. (398 aa)    
Predicted Functional Partners:
Trad_1485
ABC transporter related protein; COGs: COG1129 ABC-type sugar transport system ATPase component; InterPro IPR017871:IPR003439:IPR003593; KEGG: lch:Lcho_3199 ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: B1Y140 ABC transporter-related protein; PFAM: ABC transporter.
  
 0.951
Trad_1484
COGs: COG4213 ABC-type xylose transport system periplasmic component; KEGG: bbt:BBta_2137 multiple sugar-binding periplasmic receptor ChvE precursor; SPTR: A4BFC9 Sugar ABC transporter, periplasmic sugar-binding protein.
  
 0.939
Trad_0992
Periplasmic binding protein/LacI transcriptional regulator; COGs: COG1879 ABC-type sugar transport system periplasmic component; InterPro IPR001761; KEGG: ecf:ECH74115_5599 periplasmic binding protein/LacI transcriptional regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; SPTR: B5Z1F2 Periplasmic binding protein/LacI transcriptional regulator; PFAM: family.
  
 0.820
Trad_1249
COGs: COG4213 ABC-type xylose transport system periplasmic component; InterPro IPR013456; KEGG: rsq:Rsph17025_2619 D-xylose ABC transporter, periplasmic substrate-binding protein; SPTR: A4WVU2 D-xylose ABC transporter, periplasmic substrate-binding protein; TIGRFAM: D-xylose ABC transporter, periplasmic substrate-binding protein; PFAM: family; TIGRFAM: D-xylose ABC transporter, substrate-binding protein.
  
 0.809
Trad_1247
ABC transporter related protein; COGs: COG1129 ABC-type sugar transport system ATPase component; InterPro IPR017871:IPR003439:IPR003593; KEGG: mlo:mll3710 ABC-transport system ATP binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Q98FM1 ABC-transport system ATP binding protein; PFAM: ABC transporter.
  
 0.624
Trad_1487
Transcriptional regulator, LacI family; COGs: COG1609 Transcriptional regulators; InterPro IPR000843:IPR001761:IPR010982; KEGG: cai:Caci_4997 transcriptional regulator, LacI family; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; SPTR: C7Q3C1 Transcriptional regulator, LacI family; PFAM: Bacterial regulatory proteins, lacI family; family.
       0.611
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
       0.559
Trad_1488
Class II aldolase/adducin family protein; COGs: COG0235 Ribulose-5-phosphate 4-epimerase and related epimerase and aldolase; InterPro IPR001303; KEGG: sro:Sros_6218 L-ribulose-5-phosphate 4-epimerase; PFAM: class II aldolase/adducin family protein; SPTR: C4EH29 Ribulose-5-phosphate 4-epimerase-like epimerase or aldolase; PFAM: Class II Aldolase and Adducin N-terminal domain; TIGRFAM: L-ribulose-5-phosphate 4-epimerase.
       0.558
Trad_0694
COGs: COG1879 ABC-type sugar transport system periplasmic component; KEGG: pde:Pden_4771 ABC ribose transporter, periplasmic solute-binding protein; SPTR: Q0G1P1 ABC ribose transporter, periplasmic solute-binding protein; PFAM: family.
 
  
 0.468
Trad_2296
Periplasmic binding protein/LacI transcriptional regulator; COGs: COG1879 ABC-type sugar transport system periplasmic component; InterPro IPR001761; KEGG: smd:Smed_3227 periplasmic binding protein/LacI transcriptional regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; SPTR: A6UEH1 Periplasmic binding protein/LacI transcriptional regulator; PFAM: family.
  
 0.422
Your Current Organism:
Truepera radiovictrix
NCBI taxonomy Id: 649638
Other names: T. radiovictrix DSM 17093, Truepera radiovictrix DSM 17093, Truepera radiovictrix RQ-24, Truepera radiovictrix str. DSM 17093, Truepera radiovictrix strain DSM 17093
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