STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Trad_1616COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: amr:AM1_4833 glycosyl transferase, group 1 family protein; PFAM: glycosyl transferase group 1; SPTR: C7IU55 Glycosyl transferase group 1; PFAM: Glycosyl transferases group 1. (415 aa)    
Predicted Functional Partners:
Trad_1617
KEGG: pfl:PFL_0528 hypothetical protein; SPTR: C6MHR3 Putative uncharacterized protein; PFAM: Sulfotransferase family.
 
   
 0.876
Trad_2654
NAD-dependent epimerase/dehydratase; COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509:IPR008089:IPR016040; KEGG: cag:Cagg_0141 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: B8GCP2 NAD-dependent epimerase/dehydratase; PFAM: NAD dependent epimerase/dehydratase family.
 
    0.620
Trad_1615
Peptidase S9 prolyl oligopeptidase active site domain protein; COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR001375:IPR011042; KEGG: bsu:BSU32230 putative acylaminoacyl-peptidase; PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; SPTR: P39839 Uncharacterized peptidase yuxL; PFAM: Prolyl oligopeptidase family; WD40-like Beta Propeller Repeat.
       0.538
Trad_2078
Malto-oligosyltrehalose trehalohydrolase; COGs: COG0296 1 4-alpha-glucan branching enzyme; InterProIPR006589:IPR012768:IPR017853:IPR013783:IPR 013781:IPR004193:IPR006047; KEGG: hoh:Hoch_4560 malto-oligosyltrehalose trehalohydrolase; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; SPTR: D0LQ14 Malto-oligosyltrehalose trehalohydrolase; TIGRFAM: malto-oligosyltrehalose trehalohydrolase; PFAM: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); Alpha amylase, catalytic domain; TIGRFAM: malto-oligosylt [...]
   
 0.497
Trad_2687
Alpha amylase catalytic region; COGs: COG0296 1 4-alpha-glucan branching enzyme; InterProIPR004193:IPR006047:IPR006048:IPR006589:IPR 013783:IPR013781:IPR017853; KEGG: ana:all0875 hypothetical protein; PFAM: alpha amylase catalytic region; glycoside hydrolase family 13 domain protein; alpha amylase all-beta; SMART: alpha amylase catalytic sub domain; SPTR: Q44528 All0875 protein; PFAM: Alpha amylase, C-terminal all-beta domain; Carbohydrate-binding module 48 (Isoamylase N-terminal domain); Alpha amylase, catalytic domain.
   
 0.497
Trad_2951
Capsular exopolysaccharide family; COGs: COG0489 ATPase involved in chromosome partitioning; InterPro IPR005702:IPR003856; KEGG: ddr:Deide_20321 putative tyrosine kinase; PFAM: lipopolysaccharide biosynthesis protein; SPTR: C1CYL8 Putative tyrosine kinase; TIGRFAM: capsular exopolysaccharide family; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; TIGRFAM: capsular exopolysaccharide family.
 
  
 0.486
Trad_2864
Undecaprenyl-phosphate galactose phosphotransferase, WbaP; COGs: COG2148 Sugar transferase involved in lipopolysaccharide synthesis; InterProIPR017472:IPR017475:IPR007016:IPR003362:IPR 016040; KEGG: dge:Dgeo_0343 undecaprenyl-phosphate galactosephosphotransferase; PFAM: sugar transferase; O-antigen polymerase; PRIAM: Undecaprenyl-phosphate galactose phosphotransferase; SPTR: C1XIW2 Undecaprenyl-phosphate galactose phosphotransferase, WbaP/exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; TIGRFAM: Undecaprenyl-phosphate galactose phosphotransferase, WbaP; exopolysacc [...]
  
  
 0.474
Trad_0308
COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: vap:Vapar_0761 glycosyl transferase group 1; PFAM: glycosyl transferase group 1; SPTR: C6MPC9 Glycosyl transferase group 1; PFAM: Glycosyl transferases group 1.
  
     0.454
Trad_2856
Nucleotide sugar dehydrogenase; COGs: COG1004 UDP-glucose 6-dehydrogenase; InterProIPR017476:IPR016040:IPR014027:IPR001732:IPR 014026:IPR008927; KEGG: dae:Dtox_2846 nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; PRIAM: UDP-glucose 6-dehydrogenase; SPTR: C8W2C7 Nucleotide sugar dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; UDP-glucose/GDP-mannose dehydrogenase family, central domain; UDP [...]
 
  
 0.454
Trad_2721
Polysaccharide biosynthesis protein; COGs: COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; InterPro IPR002797; KEGG: mar:MAE_32920 polysaccharide biosynthesis protein; PFAM: polysaccharide biosynthesis protein; SPTR: A0YL48 Putative uncharacterized protein; PFAM: Polysaccharide biosynthesis protein.
 
  
 0.453
Your Current Organism:
Truepera radiovictrix
NCBI taxonomy Id: 649638
Other names: T. radiovictrix DSM 17093, Truepera radiovictrix DSM 17093, Truepera radiovictrix RQ-24, Truepera radiovictrix str. DSM 17093, Truepera radiovictrix strain DSM 17093
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.