STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Trad_1663CRISPR-associated RAMP protein, Cmr1 family; COGs: COG1367 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily); InterPro IPR005537:IPR007522; KEGG: dge:Dgeo_0965 CRISPR-associated Cmr1 family protein; PFAM: protein of unknown function DUF324; SPTR: Q1IZR9 CRISPR-associated protein TM1795 family-like protein; TIGRFAM: CRISPR-associated RAMP protein, Cmr1 family; TIGRFAM: CRISPR-associated RAMP protein, Cmr1 family. (413 aa)    
Predicted Functional Partners:
Trad_1665
CRISPR-associated protein, Cmr3 family; COGs: COG1769 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily); InterPro IPR019117:IPR010165; KEGG: dge:Dgeo_0963 hypothetical protein; PFAM: CRISPR-associated protein, Cmr3; SPTR: Q1IZS1 CRISPR-associated RAMP family protein; TIGRFAM: CRISPR-associated protein, Cmr3 family; PFAM: CRISPR-associated protein (Cas_Cmr3); TIGRFAM: CRISPR-associated protein, Cmr3 family.
 
 
   0.967
Trad_1666
CRISPR-associated RAMP protein, Cmr4 family; COGs: COG1336 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily); InterPro IPR005537:IPR013410; KEGG: dge:Dgeo_0962 CRISPR-associated RAMP Cmr4 family protein; PFAM: protein of unknown function DUF324; SPTR: Q1IZS2 CRISPR-associated RAMP Cmr4; TIGRFAM: CRISPR-associated RAMP protein, Cmr4 family; PFAM: RAMP superfamily; TIGRFAM: CRISPR-associated RAMP protein, Cmr4 family.
 
 
 
 0.967
Trad_1668
CRISPR-associated RAMP protein, Cmr6 family; COGs: COG1604 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily); InterPro IPR005537:IPR010172; KEGG: dge:Dgeo_0960 CRISPR-associated Cmr5 family protein; PFAM: protein of unknown function DUF324; SPTR: Q1IZS4 CRISPR-associated protein, TM1791; TIGRFAM: CRISPR-associated RAMP protein, Cmr6 family; PFAM: RAMP superfamily; TIGRFAM: CRISPR-associated RAMP protein, Cmr6 family.
 
 
 
 0.967
Trad_1664
CRISPR-associated protein, Crm2 family; COGs: COG1353 hydrolase of the HD superfamily (permuted catalytic motifs); InterPro IPR013407:IPR000160; KEGG: dge:Dgeo_0964 CRISPR-associated Cmr2 family protein; SPTR: Q1IZS0 CRISPR-associated protein Crm2; TIGRFAM: CRISPR-associated protein, Crm2 family; PFAM: CRISPR-associated protein; TIGRFAM: CRISPR-associated protein, Crm2 family.
 
 
 
 0.966
Trad_1670
CRISPR-associated protein, APE2256 family; COGs: COG4006 conserved hypothetical protein; InterPro IPR013442; KEGG: dge:Dgeo_0958 CRISPR-associated APE2256 family protein; PFAM: CRISPR-associated protein APE2256; SPTR: Q1IZS6 CRISPR-associated protein APE2256; TIGRFAM: CRISPR-associated protein, APE2256 family; PFAM: CRISPR-associated protein (Cas_APE2256); TIGRFAM: putative CRISPR-associated protein, APE2256 family.
 
     0.955
Trad_1669
InterPro IPR011742:IPR013383; KEGG: dge:Dgeo_0959 CRISPR-associated TM1812 family protein; PFAM: CRISPR-associated protein TM1812; SPTR: Q1IZS5 CRISPR-associated protein, TM1812; TIGRFAM: CRISPR-associated protein, TM1812 family; CRISPR-associated protein DxTHG motif; PFAM: CRISPR-associated protein (cas_TM1812); TIGRFAM: CRISPR-associated protein, TM1812 family; CRISPR-associated DxTHG motif protein.
 
     0.895
Trad_1667
InterPro IPR010160; KEGG: dge:Dgeo_0961 CRISPR-associated Cmr5 family protein; PFAM: CRISPR-associated protein TM1791.1; SPTR: Q1IZS3 CRISPR-associated protein, TM1791.1; TIGRFAM: CRISPR-associated protein, Cmr5 family; PFAM: CRISPR-associated protein (Cas_Cmr5); TIGRFAM: CRISPR-associated protein, Cmr5 family.
   
 
 0.872
Trad_1450
CRISPR-associated RAMP protein, Cmr4 family; COGs: COG1336 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily); InterPro IPR005537:IPR013410; KEGG: rxy:Rxyl_0261 CRISPR-associated RAMP Cmr4 family protein family protein; PFAM: protein of unknown function DUF324; SPTR: Q1AZE0 CRISPR-associated protein, Cmr4 family; TIGRFAM: CRISPR-associated RAMP protein, Cmr4 family; PFAM: RAMP superfamily; TIGRFAM: CRISPR-associated RAMP protein, Cmr4 family.
 
 
 
 0.855
Trad_1452
CRISPR-associated RAMP protein, Cmr6 family; COGs: COG1604 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily); InterPro IPR005537:IPR010172; KEGG: rxy:Rxyl_0259 CRISPR-associated RAMP Cmr6 family protein; PFAM: protein of unknown function DUF324; SPTR: Q1AZE2 CRISPR-associated protein, Cmr6 family; TIGRFAM: CRISPR-associated RAMP protein, Cmr6 family; PFAM: RAMP superfamily; TIGRFAM: CRISPR-associated RAMP protein, Cmr6 family.
 
 
 
 0.851
Trad_1448
CRISPR-associated protein, Crm2 family; COGs: COG1353 hydrolase of the HD superfamily (permuted catalytic motifs); InterPro IPR000160:IPR013407; KEGG: rxy:Rxyl_0263 CRISPR-associated Cmr2 family protein; SPTR: Q1AZD8 CRISPR-associated protein, Cmr2 family; TIGRFAM: CRISPR-associated protein, Crm2 family; PFAM: CRISPR-associated protein; TIGRFAM: CRISPR-associated protein, Crm2 family.
 
 
 
 0.848
Your Current Organism:
Truepera radiovictrix
NCBI taxonomy Id: 649638
Other names: T. radiovictrix DSM 17093, Truepera radiovictrix DSM 17093, Truepera radiovictrix RQ-24, Truepera radiovictrix str. DSM 17093, Truepera radiovictrix strain DSM 17093
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