STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Trad_1694COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000639:IPR000073; KEGG: tle:Tlet_0831 alpha/beta hydrolase domain-containing protein; PFAM: alpha/beta hydrolase fold; SPTR: A8F5G3 Alpha/beta hydrolase fold domain-containing protein; PFAM: alpha/beta hydrolase fold. (325 aa)    
Predicted Functional Partners:
Trad_1693
Protein of unknown function DUF1028; COGs: COG3342 conserved hypothetical protein; InterPro IPR010430:IPR014927; KEGG: hau:Haur_3098 hypothetical protein; PFAM: protein of unknown function DUF1028; Putative peptidoglycan binding; SPTR: A9B5U3 Putative uncharacterized protein; PFAM: Putative peptidoglycan binding domain; Family of unknown function (DUF1028).
       0.511
Trad_1695
ABC transporter related protein; COGs: COG3845 ABC-type uncharacterized transport systems ATPase components; InterPro IPR017871:IPR003439:IPR003593; KEGG: mta:Moth_1952 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C1XKI4 Nucleoside ABC transporter ATP-binding protein; PFAM: ABC transporter.
       0.491
Trad_1696
Inner-membrane translocator; COGs: COG4603 ABC-type uncharacterized transport system permease component; InterPro IPR001851; KEGG: ttj:TTHA1303 sugar ABC transporter, permease protein; PFAM: inner-membrane translocator; SPTR: C1XTA6 Nucleoside ABC transporter membrane protein; PFAM: Branched-chain amino acid transport system / permease component.
       0.491
Trad_1697
Inner-membrane translocator; COGs: COG1079 ABC-type transport system permease component; InterPro IPR001851; KEGG: dau:Daud_1909 inner-membrane translocator; PFAM: inner-membrane translocator; SPTR: B1I5V4 Inner-membrane translocator; PFAM: Branched-chain amino acid transport system / permease component.
       0.491
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
 
 0.480
Trad_2640
Short-chain dehydrogenase/reductase SDR; COGs: COG0300 Short-chain dehydrogenase of various substrate specificities; InterPro IPR002198:IPR002347:IPR016040; KEGG: rca:Rcas_3678 short-chain dehydrogenase/reductase SDR; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: A7NQ81 Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
   0.433
Trad_1692
Cupin 2 conserved barrel domain protein; InterPro IPR013096:IPR014710:IPR011051; KEGG: mxa:MXAN_5309 hypothetical protein; PFAM: Cupin 2 conserved barrel domain protein; SPTR: Q1D1L3 Putative uncharacterized protein; PFAM: Cupin domain.
  
  
 0.412
Your Current Organism:
Truepera radiovictrix
NCBI taxonomy Id: 649638
Other names: T. radiovictrix DSM 17093, Truepera radiovictrix DSM 17093, Truepera radiovictrix RQ-24, Truepera radiovictrix str. DSM 17093, Truepera radiovictrix strain DSM 17093
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.