STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Trad_1695ABC transporter related protein; COGs: COG3845 ABC-type uncharacterized transport systems ATPase components; InterPro IPR017871:IPR003439:IPR003593; KEGG: mta:Moth_1952 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C1XKI4 Nucleoside ABC transporter ATP-binding protein; PFAM: ABC transporter. (517 aa)    
Predicted Functional Partners:
Trad_1696
Inner-membrane translocator; COGs: COG4603 ABC-type uncharacterized transport system permease component; InterPro IPR001851; KEGG: ttj:TTHA1303 sugar ABC transporter, permease protein; PFAM: inner-membrane translocator; SPTR: C1XTA6 Nucleoside ABC transporter membrane protein; PFAM: Branched-chain amino acid transport system / permease component.
 
 0.997
Trad_1697
Inner-membrane translocator; COGs: COG1079 ABC-type transport system permease component; InterPro IPR001851; KEGG: dau:Daud_1909 inner-membrane translocator; PFAM: inner-membrane translocator; SPTR: B1I5V4 Inner-membrane translocator; PFAM: Branched-chain amino acid transport system / permease component.
 
 0.996
Trad_1698
Basic membrane lipoprotein; COGs: COG1744 Uncharacterized ABC-type transport system periplasmic component/surface lipoprotein; InterPro IPR003760; KEGG: ttj:TTHA1301 hypothetical protein; PFAM: basic membrane lipoprotein; SPTR: B7AAZ2 Basic membrane lipoprotein; PFAM: Basic membrane protein.
 
 
 0.987
Trad_0602
Inner-membrane translocator; COGs: COG4603 ABC-type uncharacterized transport system permease component; InterPro IPR001851; KEGG: dra:DR_0250 hypothetical protein; PFAM: inner-membrane translocator; SPTR: Q9RXQ7 Putative uncharacterized protein; PFAM: Branched-chain amino acid transport system / permease component.
 
 
 0.983
Trad_0603
Inner-membrane translocator; COGs: COG1079 ABC-type transport system permease component; InterPro IPR001851; KEGG: ttj:TTHA1856 ABC transporter permease protein; PFAM: inner-membrane translocator; SPTR: Q5SH74 ABC transporter permease protein; PFAM: Branched-chain amino acid transport system / permease component.
 
 0.981
Trad_1597
Basic membrane lipoprotein; COGs: COG1744 Uncharacterized ABC-type transport system periplasmic component/surface lipoprotein; InterPro IPR003760; KEGG: tth:TTC0733 membrane lipoprotein; PFAM: basic membrane lipoprotein; SPTR: Q72JN7 Membrane lipoprotein; PFAM: Basic membrane protein.
 
 0.978
Trad_2273
ABC transporter related protein; COGs: COG3845 ABC-type uncharacterized transport systems ATPase components; InterPro IPR003593:IPR003439:IPR017871; KEGG: ttj:TTHA1099 sugar ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Q72JN6 Sugar transport ATP-binding protein; PFAM: ABC transporter.
  
  
 
0.906
Trad_2294
Inner-membrane translocator; COGs: COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems permease components; InterPro IPR001851; KEGG: rhi:NGR_c33700 putative sugar ABC transporter, permease protein; PFAM: inner-membrane translocator; SPTR: C3MB91 Putative sugar ABC transporter, permease protein; PFAM: Branched-chain amino acid transport system / permease component.
 
      0.553
Trad_1141
Inner-membrane translocator; COGs: COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems permease components; InterPro IPR001851; KEGG: rxy:Rxyl_1682 inner-membrane translocator; PFAM: inner-membrane translocator; SPTR: C1XTQ1 Monosaccharide ABC transporter membrane protein, CUT2 family; PFAM: Branched-chain amino acid transport system / permease component.
 
     0.516
Trad_1694
COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000639:IPR000073; KEGG: tle:Tlet_0831 alpha/beta hydrolase domain-containing protein; PFAM: alpha/beta hydrolase fold; SPTR: A8F5G3 Alpha/beta hydrolase fold domain-containing protein; PFAM: alpha/beta hydrolase fold.
       0.491
Your Current Organism:
Truepera radiovictrix
NCBI taxonomy Id: 649638
Other names: T. radiovictrix DSM 17093, Truepera radiovictrix DSM 17093, Truepera radiovictrix RQ-24, Truepera radiovictrix str. DSM 17093, Truepera radiovictrix strain DSM 17093
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