STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Trad_1785NAD(P)H dehydrogenase (quinone); COGs: COG4635 Flavodoxin; InterPro IPR003680:IPR008254; KEGG: rer:RER_34270 hypothetical protein; PFAM: NAD(P)H dehydrogenase (quinone); SPTR: D1C958 Protoporphyrinogen oxidase. (166 aa)    
Predicted Functional Partners:
Trad_1480
Protoporphyrinogen oxidase; COGs: COG4635 Flavodoxin; InterPro IPR001226:IPR008254; KEGG: hut:Huta_1035 protoporphyrinogen oxidase; SPTR: C7NVD4 Protoporphyrinogen oxidase.
  
  
  0.970
Trad_1634
Flavodoxin-like protein; COGs: COG4635 Flavodoxin; KEGG: cpb:Cphamn1_1410 flavodoxin-like protein; SPTR: B3EJD8 Flavodoxin-like protein.
  
  
 
0.916
Trad_1780
Flavodoxin/nitric oxide synthase; COGs: COG4635 Flavodoxin; InterPro IPR008254; KEGG: ttr:Tter_2554 flavodoxin-like protein; PFAM: flavodoxin/nitric oxide synthase; SPTR: D1C958 Protoporphyrinogen oxidase.
  
  
 
0.915
Trad_1798
Flavodoxin/nitric oxide synthase; COGs: COG4635 Flavodoxin; InterPro IPR008254; KEGG: ttr:Tter_2554 flavodoxin-like protein; PFAM: flavodoxin/nitric oxide synthase; SPTR: D1C958 Protoporphyrinogen oxidase.
  
  
 
0.912
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
    
 0.907
Trad_0221
COGs: COG0408 Coproporphyrinogen III oxidase; InterPro IPR001260:IPR018375; KEGG: cag:Cagg_1294 coproporphyrinogen oxidase; PFAM: coproporphyrinogen III oxidase; PRIAM: Coproporphyrinogen oxidase; SPTR: B8G823 Coproporphyrinogen oxidase; PFAM: Coproporphyrinogen III oxidase.
     
 0.906
Trad_0583
Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.
     
 0.904
Trad_2146
COGs: COG1239 Mg-chelatase subunit ChlI; KEGG: sus:Acid_2208 magnesium protoporphyrin chelatase, putative; SPTR: Q025X1 Magnesium protoporphyrin chelatase, putative; PFAM: Sigma-54 interaction domain.
     
  0.900
Trad_1786
KEGG: dhd:Dhaf_1267 hypothetical protein; SPTR: B8G1A9 Putative uncharacterized protein.
       0.774
Trad_1784
KEGG: cyn:Cyan7425_2917 hypothetical protein; SPTR: B8HL26 Putative uncharacterized protein.
       0.773
Your Current Organism:
Truepera radiovictrix
NCBI taxonomy Id: 649638
Other names: T. radiovictrix DSM 17093, Truepera radiovictrix DSM 17093, Truepera radiovictrix RQ-24, Truepera radiovictrix str. DSM 17093, Truepera radiovictrix strain DSM 17093
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