STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Trad_1821PfkB domain protein; COGs: COG0524 Sugar kinase ribokinase family; InterPro IPR011611; KEGG: rxy:Rxyl_2598 PfkB; PFAM: PfkB domain protein; SPTR: Q1ASW3 PfkB; PFAM: pfkB family carbohydrate kinase. (386 aa)    
Predicted Functional Partners:
Trad_1820
Oxidoreductase domain protein; COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR016040; KEGG: ttr:Tter_2532 oxidoreductase domain protein; PFAM: oxidoreductase domain protein; SPTR: D1CI50 Oxidoreductase domain protein; PFAM: Oxidoreductase family, NAD-binding Rossmann fold.
 
    0.846
Trad_1819
COGs: COG1830 DhnA-type fructose-1 6-bisphosphate aldolase; InterPro IPR002915:IPR013785; KEGG: ttr:Tter_2531 deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; SPTR: D1CI49 Deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DeoC/LacD family aldolase.
 
  
 0.837
Trad_0604
COGs: COG1640 4-alpha-glucanotransferase; InterPro IPR003385:IPR017853:IPR013781; KEGG: rrs:RoseRS_1575 4-alpha-glucanotransferase; PFAM: glycoside hydrolase family 77; PRIAM: 4-alpha-glucanotransferase; SPTR: A5UTL4 4-alpha-glucanotransferase; TIGRFAM: 4-alpha-glucanotransferase; PFAM: 4-alpha-glucanotransferase; TIGRFAM: 4-alpha-glucanotransferase.
 
    
 0.645
Trad_1228
Myo-inositol catabolism IolB domain protein; COGs: COG3718 Uncharacterized protein involved in inositol metabolism; InterPro IPR010669:IPR011051; KEGG: hne:HNE_2185 myo-inositol catabolism protein IolB; PFAM: Myo-inositol catabolism IolB domain protein; SPTR: Q0C062 Myo-inositol catabolism protein IolB; PFAM: KduI/IolB family.
  
  
 0.568
Trad_2547
PfkB domain protein; COGs: COG0524 Sugar kinase ribokinase family; InterPro IPR011611:IPR002139; KEGG: dra:DR_1525 carbohydrate kinase; PFAM: PfkB domain protein; SPTR: Q9RU69 Carbohydrate kinase, PfkB family; PFAM: pfkB family carbohydrate kinase.
  
     0.554
hisA
COGs: COG0106 Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase; InterPro IPR006063:IPR006062:IPR011060:IPR013785; KEGG: ddr:Deide_20190 putative 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imid azole-4-carboxamide isomerase; PFAM: histidine biosynthesis protein; PRIAM:1-(5-phosphoribosyl)-5-((5-phosphoribosylamin o)methylideneamino)imidazole-4-carboxamideisomerase; SPTR: C1XP87 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; TIGRFAM: phosphoribosylformimino-5-aminoimidazole c [...]
  
    0.538
Trad_1818
Hypothetical protein; KEGG: cro:ROD_02191 ribonuclease HI; SPTR: D0ZL15 Ribonuclease H.
       0.533
Trad_1232
Thiamine pyrophosphate protein central region; COGs: COG3962 Acetolactate synthase; InterPro IPR000399:IPR012001:IPR012000:IPR011766; KEGG: ttr:Tter_1524 thiamine pyrophosphate protein central region; PFAM: thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; thiamine pyrophosphate protein domain protein TPP-binding; SPTR: C1XJU4 Acetolactate synthase; PFAM: Thiamine pyrophosphate enzyme, central domain; Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain.
  
  
 0.523
Trad_2158
Xylose isomerase domain protein TIM barrel; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR013022:IPR012307; KEGG: rle:pRL80084 putative epimerase/isomerase; PFAM: Xylose isomerase domain protein TIM barrel; SPTR: C1XS42 Sugar phosphate isomerase/epimerase; PFAM: Xylose isomerase-like TIM barrel.
 
  
 0.469
Trad_1848
Xylose isomerase domain protein TIM barrel; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR013022:IPR012307:IPR011418; KEGG: pjd:Pjdr2_4947 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase domain protein TIM barrel; AP endonuclease 2 domain protein; SPTR: C6J0A3 Xylose isomerase domain-containing protein; PFAM: Xylose isomerase-like TIM barrel.
 
  
 0.467
Your Current Organism:
Truepera radiovictrix
NCBI taxonomy Id: 649638
Other names: T. radiovictrix DSM 17093, Truepera radiovictrix DSM 17093, Truepera radiovictrix RQ-24, Truepera radiovictrix str. DSM 17093, Truepera radiovictrix strain DSM 17093
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