STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Trad_1858PEGA domain protein; InterPro IPR013784:IPR013229; KEGG: ttj:TTHA1766 S-layer-like protein; PFAM: PEGA domain protein; SPTR: C1XNT2 PEGA domain-containing protein; PFAM: PEGA domain. (416 aa)    
Predicted Functional Partners:
Trad_2042
InterPro IPR003010; KEGG: tth:TTC0234 hypothetical protein; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; SPTR: C1XNW1 Putative uncharacterized protein; PFAM: Carbon-nitrogen hydrolase.
 
     0.712
Trad_2659
Surface antigen (D15); COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR010827:IPR000184; KEGG: ttj:TTHA0561 outer membrane protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; SPTR: C1XJV5 Outer membrane protein/protective antigen OMA87; PFAM: Surface antigen variable number repeat; Surface antigen.
  
   
 0.675
Trad_1177
Outer membrane efflux protein; InterPro IPR003423; KEGG: ttj:TTHA0731 hypothetical protein; PFAM: outer membrane efflux protein; SPTR: C1XKE3 Outer membrane protein; PFAM: Outer membrane efflux protein.
 
  
 0.664
Trad_0019
UvrD/REP helicase; COGs: COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains); InterPro IPR014016:IPR014017:IPR000212; KEGG: ttj:TTHA0998 ATP-dependent DNA helicase; PFAM: UvrD/REP helicase; SPTR: C1XVZ8 ATP-dependent exonuclease V beta subunit, helicase and exonuclease domain-containing; PFAM: UvrD/REP helicase; Belongs to the helicase family. UvrD subfamily.
  
    0.661
Trad_0037
S-layer domain protein; InterPro IPR001119; KEGG: tth:TTC1532 S-layer protein; PFAM: S-layer domain protein; SPTR: P35830 S-layer protein; PFAM: S-layer homology domain.
 
   
 0.648
Trad_1332
General secretion pathway protein M; InterPro IPR018247:IPR019677; KEGG: dge:Dgeo_1727 type IV pilus assembly protein PilO; PFAM: General secretion pathway protein M; SPTR: C1XGT3 Putative uncharacterized protein; PFAM: Pilus assembly protein, PilO; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence.
 
     0.630
Trad_2492
KEGG: ank:AnaeK_2102 WD40 domain protein beta propeller; SPTR: B4UC98 WD40 domain protein beta Propeller.
 
    0.612
Trad_0644
NUDIX hydrolase; COGs: COG1051 ADP-ribose pyrophosphatase; InterPro IPR020084:IPR000086:IPR015797:IPR020476; KEGG: dge:Dgeo_0608 NUDIX hydrolase; PFAM: NUDIX hydrolase; SPTR: Q1J0S4 NUDIX hydrolase; PFAM: NUDIX domain; Belongs to the Nudix hydrolase family.
  
     0.593
Trad_2627
Conserved hypothetical protein; InterPro IPR013026:IPR011990; KEGG: ttj:TTHA0340 hypothetical protein; SPTR: C1XKN9 Putative uncharacterized protein.
  
   0.588
Trad_1171
KEGG: dal:Dalk_0596 hypothetical protein; SPTR: C1XGB9 Putative uncharacterized protein.
  
   0.568
Your Current Organism:
Truepera radiovictrix
NCBI taxonomy Id: 649638
Other names: T. radiovictrix DSM 17093, Truepera radiovictrix DSM 17093, Truepera radiovictrix RQ-24, Truepera radiovictrix str. DSM 17093, Truepera radiovictrix strain DSM 17093
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.