Trad_1859 protein (Truepera radiovictrix) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Trad_1859

KEGG: dge:Dgeo_1553 hypothetical protein; SPTR: Q9RUL4 Putative uncharacterized protein. (243 aa)

Predicted Functional Partners:

Trad_1858

0.506

Trad_2851

0.505

Your Current Organism:

Truepera radiovictrix

NCBI taxonomy Id: 649638
Other names: T. radiovictrix DSM 17093, Truepera radiovictrix DSM 17093, Truepera radiovictrix RQ-24, Truepera radiovictrix str. DSM 17093, Truepera radiovictrix strain DSM 17093

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
Trad_1858	Trad_1859	PEGA domain protein; InterPro IPR013784:IPR013229; KEGG: ttj:TTHA1766 S-layer-like protein; PFAM: PEGA domain protein; SPTR: C1XNT2 PEGA domain-containing protein; PFAM: PEGA domain.	KEGG: dge:Dgeo_1553 hypothetical protein; SPTR: Q9RUL4 Putative uncharacterized protein.	0.506
Trad_1859	Trad_1858	KEGG: dge:Dgeo_1553 hypothetical protein; SPTR: Q9RUL4 Putative uncharacterized protein.	PEGA domain protein; InterPro IPR013784:IPR013229; KEGG: ttj:TTHA1766 S-layer-like protein; PFAM: PEGA domain protein; SPTR: C1XNT2 PEGA domain-containing protein; PFAM: PEGA domain.	0.506
Trad_1859	Trad_2851	KEGG: dge:Dgeo_1553 hypothetical protein; SPTR: Q9RUL4 Putative uncharacterized protein.	Cell wall hydrolase/autolysin; COGs: COG0860 N-acetylmuramoyl-L-alanine amidase; InterPro IPR002508; KEGG: tth:TTC1006 N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin; SPTR: C1XIC1 N-acetylmuramoyl-L-alanine amidase; PFAM: N-acetylmuramoyl-L-alanine amidase.	0.505
Trad_2851	Trad_1859	Cell wall hydrolase/autolysin; COGs: COG0860 N-acetylmuramoyl-L-alanine amidase; InterPro IPR002508; KEGG: tth:TTC1006 N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin; SPTR: C1XIC1 N-acetylmuramoyl-L-alanine amidase; PFAM: N-acetylmuramoyl-L-alanine amidase.	KEGG: dge:Dgeo_1553 hypothetical protein; SPTR: Q9RUL4 Putative uncharacterized protein.	0.505

Network Stats

number of nodes:

11

number of edges:

54

average node degree:

9.82

avg. local clustering coefficient:

0.982

expected number of edges:

11

PPI enrichment p-value:

< 1.0e-16

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0005975

Carbohydrate metabolic process

6 of 98

1.24

1.12

0.00061

GO:0016051

Carbohydrate biosynthetic process

4 of 42

1.43

0.93

0.0081

GO:0000271

Polysaccharide biosynthetic process

3 of 21

1.61

0.87

0.0163

GO:1901135

Carbohydrate derivative metabolic process

6 of 188

0.96

0.66

0.0081

GO:0009058

Biosynthetic process

9 of 591

0.64

0.45

0.0081

(more ...)

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:1441

O-Antigen nucleotide sugar biosynthesis, and Cellular carbohydrate biosynthetic process

7 of 19

2.02

4.12

2.50e-10

CL:1442

O-Antigen nucleotide sugar biosynthesis, and Glyoxalase-like domain

5 of 13

2.04

3.06

2.67e-07

CL:1456

Alpha-D-phosphohexomutase superfamily, and Uridylyltransferase activity

4 of 6

2.28

2.9

1.97e-06

CL:1468

Glycosyl transferase family 2, and Cellular carbohydrate biosynthetic process

2 of 5

2.06

0.87

0.0230

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map00541

O-Antigen nucleotide sugar biosynthesis

4 of 11

2.01

2.48

6.86e-06

map00051

Fructose and mannose metabolism

4 of 13

1.94

2.39

7.95e-06

map00520

Amino sugar and nucleotide sugar metabolism

5 of 27

1.72

2.24

4.42e-06

map00030

Pentose phosphate pathway

2 of 17

1.52

0.69

0.0386

map01110

Biosynthesis of secondary metabolites

6 of 382

0.65

0.41

0.0231

(more ...)

Enrichment display settings

Enrichment analysis is still ongoing, please wait ...

Server load: low (16%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2024

Credits

Access

Info

About