STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Trad_1916Transcriptional regulator, HxlR family; COGs: COG1733 transcriptional regulator protein; InterPro IPR002577; KEGG: rmr:Rmar_2378 transcriptional regulator, HxlR family; PFAM: helix-turn-helix HxlR type; SPTR: C1XM35 Predicted transcriptional regulator; PFAM: HxlR-like helix-turn-helix. (125 aa)    
Predicted Functional Partners:
Trad_0085
Conserved hypothetical protein; InterPro IPR011067; KEGG: cyh:Cyan8802_1846 hypothetical protein; SPTR: C7QV65 Putative uncharacterized protein; manually curated; PFAM: PemK-like protein.
   
    0.471
Trad_0999
Transcriptional modulator of MazE/toxin, MazF; Toxic component of a type II toxin-antitoxin (TA) system.
   
    0.471
Trad_0489
NmrA family protein; COGs: COG2910 Putative NADH-flavin reductase; InterPro IPR008030:IPR016040; KEGG: fal:FRAAL4004 putative nucleoside-diphosphate-sugar epimerases; PFAM: NmrA family protein; SPTR: C1XST4 Putative NADH-flavin reductase; PFAM: NmrA-like family.
  
  
 0.404
Your Current Organism:
Truepera radiovictrix
NCBI taxonomy Id: 649638
Other names: T. radiovictrix DSM 17093, Truepera radiovictrix DSM 17093, Truepera radiovictrix RQ-24, Truepera radiovictrix str. DSM 17093, Truepera radiovictrix strain DSM 17093
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.