STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Trad_1991ABC transporter related protein; COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003593:IPR003439:IPR017871; KEGG: dra:DR_0473 ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C1XRJ9 ABC-type antimicrobial peptide transport system, ATPase component; PFAM: ABC transporter. (246 aa)    
Predicted Functional Partners:
Trad_1989
Protein of unknown function DUF214; COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838; KEGG: ddr:Deide_13280 putative ABC transporter, permease component; putative membrane protein; PFAM: protein of unknown function DUF214; SPTR: C1CVP9 Putative ABC transporter, permease component; putative membrane protein; PFAM: Predicted permease.
 
 0.974
Trad_1849
Oligopeptide/dipeptide ABC transporter, ATPase subunit; COGs: COG1123 ATPase components of various ABC-type transport systems contain duplicated ATPase; InterProIPR003593:IPR010066:IPR003439:IPR013563:IPR 017871; KEGG: rle:pRL100280 putative ATP-binding ABC transporter; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; SPTR: Q1M7M4 Putative ATP-binding ABC transporter; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; TIGRFAM: oligopeptide/ [...]
 
    
0.904
Trad_2349
ABC transporter related protein; COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterProIPR011527:IPR003593:IPR001140:IPR003439:IPR 017940; KEGG: bcv:Bcav_3580 ABC transporter related; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; SPTR: C5C2X8 ABC transporter related; PFAM: ABC transporter transmembrane region; ABC transporter.
    
0.875
Trad_0477
ABC transporter related protein; COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: scl:sce0659 sodium ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: A9EN41 Sodium ABC transporter ATP-binding protein; PFAM: ABC transporter.
   
0.836
Trad_1071
Protein of unknown function DUF214; COGs: COG0577 ABC-type antimicrobial peptide transport system permease component; InterPro IPR003838; KEGG: rce:RC1_1640 macrolide-specific ABC-type efflux carrier; PFAM: protein of unknown function DUF214; SPTR: B6INE5 Macrolide-specific ABC-type efflux carrier; PFAM: Predicted permease.
 
 0.827
Trad_0773
ABC transporter related protein; COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterProIPR003593:IPR003439:IPR017940:IPR001140:IPR 011527; KEGG: dge:Dgeo_0648 ABC transporter related; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; SPTR: Q1J0N4 ABC-type transport system, ATPase and permease component; PFAM: ABC transporter transmembrane region; ABC transporter.
    
0.809
Trad_1170
Protein of unknown function DUF214; COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838; KEGG: rpf:Rpic12D_5303 protein of unknown function DUF214; PFAM: protein of unknown function DUF214; SPTR: C1XGB8 ABC-type transport system, involved in lipoprotein release, permease component; PFAM: Predicted permease.
 
 
 0.791
Trad_1926
Protein of unknown function DUF214; COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838; KEGG: dra:DR_0487 hypothetical protein; PFAM: protein of unknown function DUF214; SPTR: Q9RX28 Putative uncharacterized protein; PFAM: Predicted permease; TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family.
 
 0.747
Trad_1565
Protein of unknown function DUF214; COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838; KEGG: rxy:Rxyl_0847 hypothetical protein; PFAM: protein of unknown function DUF214; SPTR: Q1AXR4 Putative uncharacterized protein; PFAM: Predicted permease.
 
 
 0.746
Trad_2350
ABC transporter related protein; COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterProIPR011527:IPR003593:IPR001140:IPR003439:IPR 017871:IPR017940; KEGG: bcv:Bcav_3581 ABC transporter related; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; SPTR: C5C2X9 ABC transporter related; PFAM: ABC transporter transmembrane region; ABC transporter.
    
0.694
Your Current Organism:
Truepera radiovictrix
NCBI taxonomy Id: 649638
Other names: T. radiovictrix DSM 17093, Truepera radiovictrix DSM 17093, Truepera radiovictrix RQ-24, Truepera radiovictrix str. DSM 17093, Truepera radiovictrix strain DSM 17093
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.