STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Trad_2012ABC transporter related protein; COGs: COG1126 ABC-type polar amino acid transport system ATPase component; InterPro IPR003593:IPR003439:IPR017871; KEGG: mes:Meso_1116 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: B6QXD7 GeneraL l-amino acid transport atp-binding protein aapp; PFAM: ABC transporter. (264 aa)    
Predicted Functional Partners:
Trad_2013
Polar amino acid ABC transporter, inner membrane subunit; COGs: COG0765 ABC-type amino acid transport system permease component; InterPro IPR010065:IPR000515; KEGG: rrs:RoseRS_4003 polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: A5V0E5 Polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: amine acid ABC transporter, permease protein, 3-TM regi [...]
 0.998
Trad_2014
Polar amino acid ABC transporter, inner membrane subunit; COGs: COG4597 ABC-type amino acid transport system permease component; InterPro IPR010065:IPR000515; KEGG: chl:Chy400_3495 polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: B9LCK2 Polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: amine acid ABC transporter, permease protein, 3-TM regi [...]
 
 
 0.993
Trad_2436
Polar amino acid ABC transporter, inner membrane subunit; COGs: COG0765 ABC-type amino acid transport system permease component; InterPro IPR000515:IPR010065; KEGG: sme:SM_b20975 putative amino acid uptake ABC transporter permease protein; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: B6QX10 Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: amine acid ABC transporter, pe [...]
 
 0.991
Trad_2015
Extracellular solute-binding protein family 3; COGs: COG0834 ABC-type amino acid transport/signal transduction systems periplasmic component/domain; InterPro IPR001638:IPR018313; KEGG: chl:Chy400_3494 extracellular solute-binding protein family 3; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; SPTR: B9LCK1 Extracellular solute-binding protein family 3; PFAM: Bacterial extracellular solute-binding proteins, family 3; TIGRFAM: lysine-arginine-ornithine-binding periplasmic protein.
 
 0.985
Trad_2435
Extracellular solute-binding protein family 3; COGs: COG0834 ABC-type amino acid transport/signal transduction systems periplasmic component/domain; InterPro IPR001638:IPR001320:IPR018313; KEGG: sme:SM_b20976 putative amino acid uptake ABC transporter periplasmic solute-binding protein precursor; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor; SPTR: B6QX11 Glutamine ABC transporter, periplasmic glutamine-binding protein; PFAM: Bacterial extracellular solute-binding proteins, family 3.
 
 0.891
Trad_0310
ABC transporter related protein; COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterProIPR017871:IPR001140:IPR003439:IPR017940:IPR 011527:IPR003593; KEGG: met:M446_4330 lipid ABC transporter ATPase/inner membrane protein; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; SPTR: C1XSC5 ABC-type multidrug transport system, ATPase and permease component; PFAM: ABC transporter; ABC transporter transmembrane region.
     
0.869
Trad_0573
Inner-membrane translocator; COGs: COG4177 ABC-type branched-chain amino acid transport system permease component; InterPro IPR001851; KEGG: vap:Vapar_4939 inner-membrane translocator; PFAM: inner-membrane translocator; SPTR: C5CP79 Inner-membrane translocator; PFAM: Branched-chain amino acid transport system / permease component.
 
    
 0.867
Trad_0506
ABC transporter related protein; COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterProIPR001140:IPR003439:IPR017940:IPR011527:IPR 003593; KEGG: dra:DR_0095 ABC transporter, ATP-binding protein; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; SPTR: Q9RY55 ABC transporter, ATP-binding protein; PFAM: ABC transporter transmembrane region; ABC transporter.
     
0.838
Trad_0477
ABC transporter related protein; COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: scl:sce0659 sodium ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: A9EN41 Sodium ABC transporter ATP-binding protein; PFAM: ABC transporter.
 
    
0.810
Trad_2588
COGs: COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; InterPro IPR000515; KEGG: azc:AZC_2696 peptide ABC transporter permease protein; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1XGM9 ABC-type dipeptide/oligopeptide/nickel transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component.
    
 0.756
Your Current Organism:
Truepera radiovictrix
NCBI taxonomy Id: 649638
Other names: T. radiovictrix DSM 17093, Truepera radiovictrix DSM 17093, Truepera radiovictrix RQ-24, Truepera radiovictrix str. DSM 17093, Truepera radiovictrix strain DSM 17093
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.