STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Trad_2054COGs: COG0438 Glycosyltransferase; InterPro IPR001296:IPR018114; KEGG: rmr:Rmar_1363 glycosyl transferase group 1; PFAM: glycosyl transferase group 1; SPTR: D0MIE4 Glycosyl transferase group 1; PFAM: Glycosyl transferases group 1. (866 aa)    
Predicted Functional Partners:
Trad_2055
COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: rmr:Rmar_2613 glycosyl transferase group 1; PFAM: glycosyl transferase group 1; SPTR: D0MFZ7 Glycosyl transferase group 1; PFAM: Glycosyl transferases group 1.
 
     0.938
Trad_1637
Glycosidase-related protein; COGs: COG2152 glycosylase; InterPro IPR007184; KEGG: csc:Csac_0853 glycosidase, PH1107-related; PFAM: glycosidase PH1107-related; SPTR: A4XHT5 Glycosidase, PH1107-related; PFAM: Domain of unknown function (DUF377).
 
  
 0.779
Trad_1826
Glycosidase-related protein; COGs: COG2152 glycosylase; InterPro IPR007184; KEGG: tte:TTE0063 glycosylase; PFAM: glycosidase PH1107-related; SPTR: Q8RDG9 Predicted glycosylase; PFAM: Domain of unknown function (DUF377).
 
  
 0.778
Trad_2056
Sodium/hydrogen exchanger; COGs: COG4651 Kef-type K+ transport system predicted NAD-binding component; InterPro IPR016040:IPR003148:IPR006153; KEGG: cyt:cce_3637 Na+/H+ antiporter; PFAM: sodium/hydrogen exchanger; TrkA-N domain protein; SPTR: B1X0U6 Probable Na+/H+ antiporter; PFAM: TrkA-N domain; Sodium/hydrogen exchanger family; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
  
    0.646
Trad_2078
Malto-oligosyltrehalose trehalohydrolase; COGs: COG0296 1 4-alpha-glucan branching enzyme; InterProIPR006589:IPR012768:IPR017853:IPR013783:IPR 013781:IPR004193:IPR006047; KEGG: hoh:Hoch_4560 malto-oligosyltrehalose trehalohydrolase; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; SPTR: D0LQ14 Malto-oligosyltrehalose trehalohydrolase; TIGRFAM: malto-oligosyltrehalose trehalohydrolase; PFAM: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); Alpha amylase, catalytic domain; TIGRFAM: malto-oligosylt [...]
   
 0.497
Trad_2687
Alpha amylase catalytic region; COGs: COG0296 1 4-alpha-glucan branching enzyme; InterProIPR004193:IPR006047:IPR006048:IPR006589:IPR 013783:IPR013781:IPR017853; KEGG: ana:all0875 hypothetical protein; PFAM: alpha amylase catalytic region; glycoside hydrolase family 13 domain protein; alpha amylase all-beta; SMART: alpha amylase catalytic sub domain; SPTR: Q44528 All0875 protein; PFAM: Alpha amylase, C-terminal all-beta domain; Carbohydrate-binding module 48 (Isoamylase N-terminal domain); Alpha amylase, catalytic domain.
   
 0.497
Trad_2057
Oligoendopeptidase, pepF/M3 family; COGs: COG1164 Oligoendopeptidase F; InterPro IPR011977:IPR001567; KEGG: rca:Rcas_3273 PepF/M3 family oligoendopeptidase; PFAM: peptidase M3A and M3B thimet/oligopeptidase F; SPTR: A7NP28 Oligoendopeptidase, pepF/M3 family; TIGRFAM: oligoendopeptidase, pepF/M3 family; PFAM: Oligopeptidase F; Peptidase family M3; TIGRFAM: oligoendopeptidase, pepF/M3 family.
       0.495
Trad_2864
Undecaprenyl-phosphate galactose phosphotransferase, WbaP; COGs: COG2148 Sugar transferase involved in lipopolysaccharide synthesis; InterProIPR017472:IPR017475:IPR007016:IPR003362:IPR 016040; KEGG: dge:Dgeo_0343 undecaprenyl-phosphate galactosephosphotransferase; PFAM: sugar transferase; O-antigen polymerase; PRIAM: Undecaprenyl-phosphate galactose phosphotransferase; SPTR: C1XIW2 Undecaprenyl-phosphate galactose phosphotransferase, WbaP/exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; TIGRFAM: Undecaprenyl-phosphate galactose phosphotransferase, WbaP; exopolysacc [...]
  
  
 0.474
Trad_2053
Pseudouridine synthase, RluA family; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
  
   0.462
Trad_1561
COGs: COG0562 UDP-galactopyranose mutase; InterPro IPR000172:IPR015899:IPR016040:IPR004379; KEGG: dra:DR_A0367 UDP-galactopyranose mutase; PFAM: UDP-galactopyranose mutase-like; glucose-methanol-choline oxidoreductase; PRIAM: UDP-galactopyranose mutase; SPTR: Q9RYF1 UDP-galactopyranose mutase; TIGRFAM: UDP-galactopyranose mutase; PFAM: UDP-galactopyranose mutase; TIGRFAM: UDP-galactopyranose mutase.
  
  
 0.412
Your Current Organism:
Truepera radiovictrix
NCBI taxonomy Id: 649638
Other names: T. radiovictrix DSM 17093, Truepera radiovictrix DSM 17093, Truepera radiovictrix RQ-24, Truepera radiovictrix str. DSM 17093, Truepera radiovictrix strain DSM 17093
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