STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Trad_2076Chromosome segregation and condensation protein ScpA; COGs: COG1354 conserved hypothetical protein; InterPro IPR003768; KEGG: dge:Dgeo_1603 hypothetical protein; PFAM: chromosome segregation and condensation protein ScpA; SPTR: Q1IXY6 Putative uncharacterized protein. (253 aa)    
Predicted Functional Partners:
Trad_1313
Chromosome segregation and condensation protein, ScpB; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.
 
 
 0.995
Trad_2077
Phosphoglycerate mutase; COGs: COG0406 Fructose-2 6-bisphosphatase; InterPro IPR013078; KEGG: ddr:Deide_20400 putative phosphoglycerate mutase GpmB; PFAM: Phosphoglycerate mutase; SPTR: C1CYM6 Putative phosphoglycerate mutase gpmB; PFAM: Phosphoglycerate mutase family.
  
    0.784
Trad_2845
Peptidase M23; COGs: COG1196 Chromosome segregation ATPase; InterPro IPR016047:IPR011055; KEGG: tth:TTC0705 hypothetical protein; PFAM: Peptidase M23; SPTR: Q72JR3 Putative uncharacterized protein; PFAM: Peptidase family M23.
  
 
 0.730
smc
SMC domain protein; Required for chromosome condensation and partitioning. Belongs to the SMC family.
 
 
 0.685
cmk
COGs: COG0283 Cytidylate kinase; InterPro IPR003136:IPR011994; KEGG: ddr:Deide_22220 putative cytidylate kinase (cytidine monophosphate kinase, deoxycytidine kinase, deoxycytidylate kinase); PFAM: cytidylate kinase region; SPTR: B7ABT4 Cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: Cytidylate kinase; TIGRFAM: cytidylate kinase.
  
  
 0.627
Trad_0037
S-layer domain protein; InterPro IPR001119; KEGG: tth:TTC1532 S-layer protein; PFAM: S-layer domain protein; SPTR: P35830 S-layer protein; PFAM: S-layer homology domain.
  
 
 0.587
Trad_0650
KEGG: afw:Anae109_0133 methyltransferase type 11; SPTR: A7H6K5 Methyltransferase type 11.
  
 
 0.587
Trad_0765
Peptidoglycan-binding lysin domain protein; COGs: COG1196 Chromosome segregation ATPase; InterPro IPR002482:IPR018392:IPR009053; KEGG: hypothetical protein; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM; SPTR: Q4Q3D8 Putative uncharacterized protein; PFAM: LysM domain.
  
 
 0.587
ftsE
Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.
  
    0.532
Trad_1461
Response regulator receiver protein; KEGG: dge:Dgeo_1575 metal dependent phosphohydrolase; SPTR: C1XYF2 Putative uncharacterized protein; PFAM: HD domain; TIGRFAM: uncharacterized domain HDIG.
  
     0.520
Your Current Organism:
Truepera radiovictrix
NCBI taxonomy Id: 649638
Other names: T. radiovictrix DSM 17093, Truepera radiovictrix DSM 17093, Truepera radiovictrix RQ-24, Truepera radiovictrix str. DSM 17093, Truepera radiovictrix strain DSM 17093
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