STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Trad_2254NMT1/THI5 like domain protein; COGs: COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components; InterPro IPR015168; KEGG: ttr:Tter_1222 NMT1/THI5 like domain protein; PFAM: NMT1/THI5 like domain protein; SPTR: D1CBG5 NMT1/THI5 like domain protein; PFAM: NMT1/THI5 like. (343 aa)    
Predicted Functional Partners:
Trad_2255
Binding-protein-dependent transport systems inner membrane component; COGs: COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system permease component; InterPro IPR000515; KEGG: ttr:Tter_1221 binding-protein-dependent transport systems inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: D1CBG4 Binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport system inner membrane component.
 
  
 0.967
Trad_2256
ABC transporter related protein; COGs: COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system ATPase component; InterPro IPR003593:IPR003439:IPR017871; KEGG: sma:SAV_1340 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C8NXX6 ABC superfamily ATP binding cassette transporter, ABC protein; PFAM: ABC transporter.
  
 0.966
Trad_0924
Binding-protein-dependent transport systems inner membrane component; COGs: COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system permease component; InterPro IPR000515; KEGG: atc:AGR_C_4335 putative aliphatic sulfonates transport permease protein SsuC; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1XQK3 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component.
 
  
 0.869
Trad_0923
Binding-protein-dependent transport systems inner membrane component; COGs: COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system permease component; InterPro IPR000515; KEGG: mch:Mchl_2051 binding-protein-dependent transport systems inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1XQK2 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component.
 
  
 0.868
Trad_0626
Binding-protein-dependent transport systems inner membrane component; COGs: COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system permease component; InterPro IPR000515; KEGG: tth:TTC0419 ABC transporter permease protein; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: Q72KS3 ABC transporter permease protein; PFAM: Binding-protein-dependent transport system inner membrane component.
 
  
 0.843
Trad_2257
Transcriptional activator, TenA family; COGs: COG0819 Putative transcription activator; InterPro IPR016084:IPR004305; KEGG: gyc:GYMC61_1410 transcriptional activator, TenA family; PFAM: TENA/THI-4 domain protein; SPTR: C9RX49 Transcriptional activator, TenA family; PFAM: TENA/THI-4/PQQC family.
  
  
 0.786
Trad_2258
YKOF domain protein; InterPro IPR016198:IPR011522; KEGG: rle:RL4399 hypothetical protein; PFAM: YKOF domain protein; SPTR: Q1MAZ9 Putative uncharacterized protein; PFAM: YKOF-related Family.
       0.773
Trad_0922
ABC transporter related protein; COGs: COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system ATPase component; InterPro IPR003593:IPR003439:IPR017871; KEGG: bbt:BBta_6033 putative ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C1XQJ8 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component; manually curated; PFAM: ABC transporter.
  
 0.725
Trad_0627
ABC transporter related protein; COGs: COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system ATPase component; InterPro IPR003593:IPR003439:IPR017871; KEGG: tth:TTC0420 ABC transporter ATP-binding protein (taurine); PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Q72KS2 ABC transporter ATP-binding protein (Taurine); PFAM: ABC transporter.
  
 0.614
Trad_1460
FAD-dependent pyridine nucleotide-disulfide oxidoreductase; COGs: COG1251 NAD(P)H-nitrite reductase; InterPro IPR017941:IPR013027:IPR004099:IPR016156; KEGG: rmr:Rmar_0914 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Rieske [2Fe-2S] iron-sulphur domain; SPTR: D0MH23 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Rieske [2Fe-2S] domain.
  
  
 0.441
Your Current Organism:
Truepera radiovictrix
NCBI taxonomy Id: 649638
Other names: T. radiovictrix DSM 17093, Truepera radiovictrix DSM 17093, Truepera radiovictrix RQ-24, Truepera radiovictrix str. DSM 17093, Truepera radiovictrix strain DSM 17093
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