STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Trad_2284COGs: COG2355 Zn-dependent dipeptidase microsomal dipeptidase homolog; InterPro IPR008257; KEGG: dge:Dgeo_1112 peptidase M19, renal dipeptidase; PFAM: peptidase M19 renal dipeptidase; SPTR: Q1IZC4 Dipeptidase M19; PFAM: Membrane dipeptidase (Peptidase family M19). (345 aa)    
Predicted Functional Partners:
Trad_2764
Peptidase C26; COGs: COG2071 glutamine amidotransferase; InterPro IPR017926:IPR011697; KEGG: tro:trd_1022 probable glutamine amidotransferase; PFAM: peptidase C26; SPTR: B9L018 Probable glutamine amidotransferase; PFAM: Peptidase C26.
     0.922
Trad_2285
Dihydrouridine synthase DuS; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.
       0.628
Trad_2283
InterPro IPR016181:IPR000182; KEGG: dge:Dgeo_0078 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: Q1J2A3 GCN5-related N-acetyltransferase; PFAM: Acetyltransferase (GNAT) family.
  
    0.455
Trad_1865
Putative esterase; COGs: COG2382 Enterochelin esterase; InterPro IPR000801; KEGG: ddr:Deide_04260 putative enterochelin esterase; PFAM: putative esterase; SPTR: C1XXP9 Enterochelin esterase-like enzyme; PFAM: Putative esterase.
  
    0.407
Your Current Organism:
Truepera radiovictrix
NCBI taxonomy Id: 649638
Other names: T. radiovictrix DSM 17093, Truepera radiovictrix DSM 17093, Truepera radiovictrix RQ-24, Truepera radiovictrix str. DSM 17093, Truepera radiovictrix strain DSM 17093
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