STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Trad_2312CRISPR-associated helicase Cas3; COGs: COG1203 helicase; InterPro IPR001650:IPR006474:IPR014021; KEGG: dge:Dgeo_2629 CRISPR-associated helicase Cas3 family protein protein; PFAM: helicase domain protein; SMART: helicase domain protein; SPTR: C1XFZ7 CRISPR-associated helicase Cas3; TIGRFAM: CRISPR-associated helicase Cas3; PFAM: DEAD/DEAH box helicase; TIGRFAM: CRISPR-associated helicase Cas3. (896 aa)    
Predicted Functional Partners:
Trad_2307
InterPro IPR010147:IPR013422; KEGG: ppd:Ppro_2339 CRISPR-associated Cas5 family protein; PFAM: CRISPR-associated protein CT1976; SPTR: C1XG02 CRISPR-associated protein, Cas5e family; TIGRFAM: CRISPR-associated protein Cas5 family; CRISPR-associated protein Cas5; PFAM: CRISPR-associated protein (Cas_Cas5); TIGRFAM: CRISPR-associated protein Cas5, N-terminal domain; CRISPR-associated protein Cas5, Ecoli subtype.
 
 
 0.978
Trad_2308
InterPro IPR010148; KEGG: dge:Dgeo_2632 CRISPR-associated CSE4 family protein; PFAM: CRISPR-associated protein CT1975; SPTR: C1XG01 CRISPR-associated protein, Cse4 family; TIGRFAM: CRISPR-associated protein, Cse4 family; PFAM: CT1975-like protein; TIGRFAM: CRISPR-associated protein, Cse4 family.
 
 
 0.978
Trad_2306
InterPro IPR010179; KEGG: dge:Dgeo_2634 CRISPR-associated CSE3 family protein; PFAM: CRISPR-associated protein CT1974; SPTR: Q1J366 CRISPR-associated protein, CT1974; TIGRFAM: CRISPR-associated protein, Cse3 family; PFAM: CRISPR associated protein; TIGRFAM: CRISPR-associated protein, Cse3 family.
 
 
 
 0.977
Trad_2310
CRISPR-associated protein, Cse1 family; InterPro IPR013381; KEGG: ttj:TTHB188 hypothetical protein; PFAM: CRISPR-associated protein Cse1; SPTR: C1XFZ8 CRISPR-associated protein, Cse1 family; TIGRFAM: CRISPR-associated protein, Cse1 family; PFAM: CRISPR-associated protein Cse1 (CRISPR_cse1); TIGRFAM: CRISPR-associated protein, Cse1 family.
 
 0.973
Trad_2304
CRISPR-associated protein Cas2; InterPro IPR010152; KEGG: ttj:TTHB194 hypothetical protein; PFAM: CRISPR-associated protein Cas2; SPTR: C1XG05 CRISPR-associated protein, Cas2 family; TIGRFAM: CRISPR-associated protein Cas2; PFAM: CRISPR-associated protein (Cas_Cas2CT1978); TIGRFAM: CRISPR-associated protein Cas2, E. coli subfamily.
 
  
 0.919
cas1-3
CRISPR-associated protein Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
 
  
 0.919
Trad_2311
Hypothetical protein; KEGG: Paramyosin; SPTR: C1XYI0 Putative uncharacterized protein.
       0.773
Trad_2313
Helix-turn-helix type 11 domain protein; COGs: COG2378 transcriptional regulator protein; InterPro IPR013196; KEGG: ttj:TTHB186 putative transcriptional regulator; PFAM: Helix-turn-helix type 11 domain protein; SPTR: Q53VY3 Putative transcriptional regulator; PFAM: HTH domain.
 
     0.751
Trad_2309
InterPro IPR013382; KEGG: ppd:Ppro_2341 CRISPR-associated CSE2 family protein; PFAM: CRISPR-associated protein Cse2; SPTR: C1XFZ9 CRISPR-associated protein, Cse2 family; TIGRFAM: CRISPR-associated protein, Cse2 family; PFAM: CRISPR-associated protein Cse2 (CRISPR_cse2); TIGRFAM: CRISPR-associated protein, Cse2 family.
  
  
 0.691
Your Current Organism:
Truepera radiovictrix
NCBI taxonomy Id: 649638
Other names: T. radiovictrix DSM 17093, Truepera radiovictrix DSM 17093, Truepera radiovictrix RQ-24, Truepera radiovictrix str. DSM 17093, Truepera radiovictrix strain DSM 17093
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