STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Trad_2388Transcriptional regulator, AsnC family; COGs: COG1522 Transcriptional regulators; InterProIPR000485:IPR011008:IPR011991:IPR019888:IPR 000835:IPR019887; KEGG: sgr:SGR_6107 AsnC family transcriptional regulator; PFAM: Transcription regulator, AsnC-type-like; regulatory protein MarR; SMART: Transcription regulator, AsnC-type; SPTR: C0U8F2 Transcriptional regulator, AsnC family; PFAM: MarR family; AsnC family. (156 aa)    
Predicted Functional Partners:
Trad_2389
COGs: COG4552 acetyltransferase involved in intracellular survival and related acetyltransferase; InterPro IPR016181:IPR000182; KEGG: sro:Sros_7318 acetyltransferase; SPTR: C4DRY0 Predicted acetyltransferase.
       0.773
Trad_2387
Diguanylate cyclase with GAF sensor; COGs: COG2199 FOG: GGDEF domain; InterPro IPR003660:IPR003018:IPR000160:IPR007891; KEGG: ddr:Deide_18070 putative diguanylate-cyclase; PFAM: GGDEF domain containing protein; CHASE3 domain protein; histidine kinase HAMP region domain protein; SMART: GGDEF domain containing protein; histidine kinase HAMP region domain protein; GAF domain protein; SPTR: C1CX77 Putative diguanylate-cyclase; TIGRFAM: diguanylate cyclase; PFAM: HAMP domain; GGDEF domain; CHASE3 domain; TIGRFAM: diguanylate cyclase (GGDEF) domain.
       0.606
Trad_0209
COGs: COG0069 Glutamate synthase domain 2; InterProIPR017932:IPR000583:IPR006982:IPR002932:IPR 002489:IPR013785; KEGG: chl:Chy400_3517 glutamate synthase (ferredoxin); PFAM: ferredoxin-dependent glutamate synthase; glutamine amidotransferase class-II; glutamate synthase; glutamate synthase alpha subunit domain protein; PRIAM: Glutamate synthase (ferredoxin); SPTR: B9LCZ9 Glutamate synthase (Ferredoxin); PFAM: Conserved region in glutamate synthase; GXGXG motif; Glutamate synthase central domain; Glutamine amidotransferases class-II.
     
 0.536
Trad_2415
Transcriptional regulator, AsnC family; COGs: COG1522 Transcriptional regulators; InterProIPR000485:IPR011008:IPR011991:IPR019888:IPR 019887; KEGG: tro:trd_A0750 transcription regulator, Lrp/AsnC family; PFAM: Transcription regulator, AsnC-type-like; SMART: Transcription regulator, AsnC-type; SPTR: B9L4N6 Transcription regulator, Lrp/AsnC family; PFAM: AsnC family.
  
     0.443
Your Current Organism:
Truepera radiovictrix
NCBI taxonomy Id: 649638
Other names: T. radiovictrix DSM 17093, Truepera radiovictrix DSM 17093, Truepera radiovictrix RQ-24, Truepera radiovictrix str. DSM 17093, Truepera radiovictrix strain DSM 17093
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