STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Trad_2425Protein of unknown function DUF554; COGs: COG1811 Uncharacterized membrane protein possible Na+ channel or pump; InterPro IPR007563; KEGG: tth:TTC0522 hypothetical protein; PFAM: protein of unknown function DUF554; SPTR: Q72KC5 Hypothetical membrane spanning protein; PFAM: Protein of unknown function (DUF554). (243 aa)    
Predicted Functional Partners:
Trad_2424
KEGG: azo:azo0108 hypothetical protein; SPTR: A1K1M1 Conserved hypothetical secreted protein.
       0.642
Trad_2426
Hypothetical protein; KEGG: FAP55; flagellar associated protein; SPTR: C1XVX0 MoxR-like ATPase.
       0.598
Trad_2423
KEGG: sal:Sala_1016 hypothetical protein; SPTR: Q1GUD9 Putative uncharacterized protein.
       0.496
Trad_1751
InterPro IPR000620; KEGG: dge:Dgeo_1301 hypothetical protein; PFAM: protein of unknown function DUF6 transmembrane; SPTR: Q1IYT7 Putative uncharacterized protein; PFAM: EamA-like transporter family.
  
     0.464
Trad_2427
Phenylacetate--CoA ligase; COGs: COG1541 Coenzyme F390 synthetase; InterPro IPR000873; KEGG: tth:TTC0135 coenzyme F390 synthetase/phenylaceate-CoA ligase; PFAM: AMP-dependent synthetase and ligase; PRIAM: Phenylacetate--CoA ligase; SPTR: C1XXR5 Coenzyme F390 synthetase; PFAM: AMP-binding enzyme.
       0.453
Trad_2428
Lycopene cyclase family protein; COGs: COG0644 Dehydrogenase (flavoprotein); InterPro IPR003042:IPR008671:IPR010108; KEGG: rrs:RoseRS_2643 lycopene cyclase family protein; PFAM: Lycopene beta and epsilon cyclase; PRIAM: Capsanthin/capsorubin synthase; SPTR: A5UWL4 Lycopene cyclase (CrtL-type); TIGRFAM: lycopene cyclase family protein; PFAM: Lycopene cyclase protein; TIGRFAM: lycopene cyclase family protein.
       0.419
Trad_1180
Metal dependent phosphohydrolase; COGs: COG2316 hydrolase (HD superfamily); InterPro IPR003607:IPR006675:IPR006674; KEGG: ttj:TTHA1791 hydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; SPTR: Q5SHD9 Putative hydrolase (HD domain); TIGRFAM: metal dependent phophohydrolase; PFAM: HD domain; TIGRFAM: uncharacterized domain HDIG.
  
     0.417
Your Current Organism:
Truepera radiovictrix
NCBI taxonomy Id: 649638
Other names: T. radiovictrix DSM 17093, Truepera radiovictrix DSM 17093, Truepera radiovictrix RQ-24, Truepera radiovictrix str. DSM 17093, Truepera radiovictrix strain DSM 17093
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