STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Trad_2430Major facilitator superfamily MFS_1; COGs: COG2223 Nitrate/nitrite transporter; InterPro IPR016196:IPR011701; KEGG: rca:Rcas_1836 major facilitator transporter; PFAM: major facilitator superfamily MFS_1; SPTR: A7NKA7 Major facilitator superfamily MFS_1; PFAM: Major Facilitator Superfamily. (406 aa)    
Predicted Functional Partners:
Trad_1460
FAD-dependent pyridine nucleotide-disulfide oxidoreductase; COGs: COG1251 NAD(P)H-nitrite reductase; InterPro IPR017941:IPR013027:IPR004099:IPR016156; KEGG: rmr:Rmar_0914 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Rieske [2Fe-2S] iron-sulphur domain; SPTR: D0MH23 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Rieske [2Fe-2S] domain.
  
  
 0.671
Trad_2429
Na+/Ca+ antiporter, CaCA family; COGs: COG0530 Ca2+/Na+ antiporter; InterPro IPR004837:IPR004481; KEGG: sdn:Sden_3438 K+-dependent Na+/Ca+ exchanger related-protein; PFAM: sodium/calcium exchanger membrane region; SPTR: C1XHT8 K+dependent Na+ exchanger related-protein; TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: Sodium/calcium exchanger protein; TIGRFAM: calcium/proton exchanger (cax); K+-dependent Na+/Ca+ exchanger related-protein.
 
     0.612
Trad_2268
COGs: COG0314 Molybdopterin converting factor large subunit; InterProIPR003448:IPR016155:IPR012675:IPR003749:IPR 010034; KEGG: ttj:TTHA0059 molybdenum cofactor biosynthesis protein D/E; PFAM: thiamineS protein; molybdopterin biosynthesis MoaE protein; SPTR: Q5SM84 Molybdenum cofactor biosynthesis protein D/E; TIGRFAM: molybdopterin converting factor, subunit 1; PFAM: ThiS family; MoaE protein; TIGRFAM: molybdopterin converting factor, subunit 1, non-archaeal.
  
  
 0.588
Trad_1026
Molybdopterin oxidoreductase, iron-sulfur binding subunit; COGs: COG0437 Fe-S-cluster-containing hydrogenase components 1; InterPro IPR006311:IPR017896:IPR009010; KEGG: noc:Noc_1238 molybdopterin oxidoreductase, iron-sulfur binding subunit; SPTR: Q3JBQ7 Molybdopterin oxidoreductase, iron-sulfur binding subunit.
  
  
 0.547
Trad_2617
Xylose isomerase domain protein TIM barrel; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307:IPR001719:IPR013022; KEGG: ttj:TTHA1934 hypothetical protein; PFAM: Xylose isomerase domain protein TIM barrel; SMART: AP endonuclease family 2; SPTR: Q5SGZ6 Putative uncharacterized protein TTHA1934; PFAM: Xylose isomerase-like TIM barrel.
  
    0.504
Trad_2357
Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein; COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; KEGG: tth:TTC0082 leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein; SPTR: Q72LH7 Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein.
  
  
 0.468
Your Current Organism:
Truepera radiovictrix
NCBI taxonomy Id: 649638
Other names: T. radiovictrix DSM 17093, Truepera radiovictrix DSM 17093, Truepera radiovictrix RQ-24, Truepera radiovictrix str. DSM 17093, Truepera radiovictrix strain DSM 17093
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.