STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Trad_2495KEGG: syx:SynWH7803_1415 ABC-type amino acid transport system permease component; SPTR: A4CV67 ABC transporter for amino acids, membrane component. (149 aa)    
Predicted Functional Partners:
Trad_2496
KEGG: kra:Krad_2468 hypothetical protein; SPTR: A6WAV5 Putative uncharacterized protein.
       0.773
Trad_2497
Transcriptional regulator, XRE family; COGs: COG1476 transcriptional regulator protein; InterPro IPR001387:IPR010982; KEGG: kra:Krad_2467 transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: A6WAV4 Transcriptional regulator, XRE family; PFAM: Helix-turn-helix.
       0.664
Trad_2494
KEGG: kra:Krad_2468 hypothetical protein; SPTR: C2ERC0 Acid phosphatase.
       0.495
truB
tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.
       0.477
Your Current Organism:
Truepera radiovictrix
NCBI taxonomy Id: 649638
Other names: T. radiovictrix DSM 17093, Truepera radiovictrix DSM 17093, Truepera radiovictrix RQ-24, Truepera radiovictrix str. DSM 17093, Truepera radiovictrix strain DSM 17093
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.