STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Trad_2565COGs: COG2423 ornithine cyclodeaminase mu-crystallin homolog; InterPro IPR003462:IPR016040; KEGG: mxa:MXAN_7058 ornithine cyclodeaminase/mu-crystallin family protein; PFAM: ornithine cyclodeaminase/mu-crystallin; SPTR: Q1CWQ2 Ornithine cyclodeaminase/mu-crystallin family protein; PFAM: Ornithine cyclodeaminase/mu-crystallin family. (298 aa)    
Predicted Functional Partners:
Trad_1349
COGs: COG0075 Serine-pyruvate aminotransferase/ aspartate aminotransferase; InterPro IPR020578:IPR000192:IPR015421:IPR015424; KEGG: dge:Dgeo_1114 serine--pyruvate transaminase; PFAM: aminotransferase class V; SPTR: Q1IZC2 Serine--pyruvate transaminase; manually curated; PFAM: Aminotransferase class-V.
    
  0.903
Trad_1960
COGs: COG0160 4-aminobutyrate aminotransferase and related aminotransferase; InterPro IPR015424:IPR015421:IPR005814; KEGG: sus:Acid_7662 aminotransferase; PFAM: aminotransferase class-III; SPTR: Q01P59 Aminotransferase; PFAM: Aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
    
  0.903
Trad_2499
COGs: COG0686 Alanine dehydrogenase; InterProIPR007886:IPR007698:IPR016040:IPR008143:IPR 008141; KEGG: ttj:TTHA0216 alanine dehydrogenase; PFAM: alanine dehydrogenase/PNT domain protein; PRIAM: Alanine dehydrogenase; SPTR: Q5SLS7 Alanine dehydrogenase; TIGRFAM: alanine dehydrogenase; PFAM: Alanine dehydrogenase/PNT, C-terminal domain; Alanine dehydrogenase/PNT, N-terminal domain; TIGRFAM: alanine dehydrogenase; Belongs to the AlaDH/PNT family.
    
  0.902
Trad_2439
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
     
 0.814
Trad_0061
COGs: COG2423 ornithine cyclodeaminase mu-crystallin homolog; InterPro IPR003462:IPR016040; KEGG: rxy:Rxyl_2927 ornithine cyclodeaminase; PFAM: ornithine cyclodeaminase/mu-crystallin; SPTR: Q1ARZ1 Ornithine cyclodeaminase; PFAM: Ornithine cyclodeaminase/mu-crystallin family.
  
     0.775
Trad_0841
COGs: COG3938 Proline racemase; InterPro IPR008794; KEGG: bur:Bcep18194_B1660 proline racemase; PFAM: proline racemase; PRIAM: Proline racemase; SPTR: Q395T7 Proline racemase; PFAM: Proline racemase; Belongs to the proline racemase family.
 
   
 0.651
Trad_2566
Abortive infection protein; InterPro IPR003675; KEGG: tth:TTC0492 hypothetical protein; PFAM: Abortive infection protein; SPTR: C1XKD3 CAAX amino terminal protease family; PFAM: CAAX amino terminal protease family.
       0.578
Trad_2564
Protein of unknown function UPF0118; COGs: COG0628 permease; InterPro IPR002549; KEGG: ote:Oter_3895 hypothetical protein; PFAM: protein of unknown function UPF0118; SPTR: B9XFU0 Putative uncharacterized protein; PFAM: Domain of unknown function DUF20.
       0.527
Your Current Organism:
Truepera radiovictrix
NCBI taxonomy Id: 649638
Other names: T. radiovictrix DSM 17093, Truepera radiovictrix DSM 17093, Truepera radiovictrix RQ-24, Truepera radiovictrix str. DSM 17093, Truepera radiovictrix strain DSM 17093
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.