STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Trad_2639COGs: COG0778 Nitroreductase; InterPro IPR000415; KEGG: rmr:Rmar_2000 nitroreductase; PFAM: nitroreductase; SPTR: D0MKG9 Nitroreductase; PFAM: Nitroreductase family. (218 aa)    
Predicted Functional Partners:
Trad_2640
Short-chain dehydrogenase/reductase SDR; COGs: COG0300 Short-chain dehydrogenase of various substrate specificities; InterPro IPR002198:IPR002347:IPR016040; KEGG: rca:Rcas_3678 short-chain dehydrogenase/reductase SDR; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: A7NQ81 Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
   0.755
Trad_0478
ABC-2 type transporter; InterPro IPR013526:IPR013525; KEGG: tte:TTE1177 ABC-type multidrug transport system, permease component; PFAM: ABC-2 type transporter; SPTR: Q8R6H7 ABC-type multidrug transport system, permease component; PFAM: ABC-2 type transporter.
  
  
 0.687
Trad_0175
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; COGs: COG1225 Peroxiredoxin; InterPro IPR017936:IPR000866:IPR012336:IPR012335; KEGG: ttj:TTHA1300 bacterioferritin comigratory protein, thiol peroxidase, putative; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Q5SIR4 Bacterioferritin comigratory protein, thiol peroxidase, putative; PFAM: AhpC/TSA family.
 
  
 0.613
Trad_1887
3,4-dihydroxyphenylacetate 2,3-dioxygenase; InterPro IPR011981:IPR004360:IPR000486; KEGG: rlt:Rleg2_4442 3,4-dihydroxyphenylacetate 2,3-dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: A0NXR6 Extradiol ring-cleavage dioxygenase:Glyoxalase/Bleomycin resistance protein/dioxygenase domain:Glyoxalase I; TIGRFAM: 3,4-dihydroxyphenylacetate 2,3-dioxygenase; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; TIGRFAM: 3,4-dihydroxyphenylacetate 2,3-dioxygenase.
  
  
 0.589
cobQ
Cobyric acid synthase CobQ; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.
  
  
 0.562
Trad_0669
COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR020845:IPR000873; KEGG: hau:Haur_4238 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase and ligase; SPTR: A9AXF0 AMP-dependent synthetase and ligase; PFAM: AMP-binding enzyme.
   
 
 0.548
Trad_2651
Glyoxalase/bleomycin resistance protein/dioxygenase; COGs: COG0346 Lactoylglutathione lyase and related lyase; InterPro IPR004360; KEGG: hau:Haur_2686 glyoxalase/bleomycin resistance protein/dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: A9B146 Glyoxalase/bleomycin resistance protein/dioxygenase; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily.
  
  
 0.522
Trad_2638
KEGG: chl:Chy400_0712 hypothetical protein; SPTR: B9LK85 Putative uncharacterized protein.
     
 0.493
ribBA
GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
  
 
 0.492
Trad_2641
Hypothetical protein; KEGG: paa:Paes_0449 restriction endonuclease; SPTR: Q4S5X4 Chromosome 9 SCAF14729, whole genome shotgun sequence. (Fragment).
       0.488
Your Current Organism:
Truepera radiovictrix
NCBI taxonomy Id: 649638
Other names: T. radiovictrix DSM 17093, Truepera radiovictrix DSM 17093, Truepera radiovictrix RQ-24, Truepera radiovictrix str. DSM 17093, Truepera radiovictrix strain DSM 17093
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