STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
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Experiments
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Textmining
[Homology]
Score
Trad_2668Two component transcriptional regulator, LuxR family; COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR000792:IPR001789:IPR011991:IPR011006; KEGG: ddr:Deide_20700 putative response regulator, NarL; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; SPTR: Q1J1L6 Two component transcriptional regulator, LuxR family; PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family. (227 aa)    
Predicted Functional Partners:
Trad_0777
COGs: COG4585 Signal transduction histidine kinase; InterProIPR003018:IPR005467:IPR011712:IPR003594:IPR 004358; KEGG: dge:Dgeo_1992 multi-sensor signal transduction histidine kinase; PFAM: histidine kinase dimerisation and phosphoacceptor region; GAF domain protein; ATP-binding region ATPase domain protein; SMART: GAF domain protein; SPTR: Q1IWU8 Multi-sensor signal transduction histidine kinase; PFAM: Histidine kinase; GAF domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
 0.881
Trad_1491
COGs: COG4585 Signal transduction histidine kinase; InterProIPR005467:IPR013656:IPR011712:IPR003594:IPR 000014:IPR003018:IPR004358; KEGG: rca:Rcas_4226 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; PAS fold-4 domain protein; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; GAF domain protein; SPTR: C1XTQ5 PAS domain S-box protein; TIGRFAM: PAS sensor protein; PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATP [...]
 
 0.873
Trad_1796
COGs: COG4585 Signal transduction histidine kinase; InterProIPR004358:IPR013656:IPR011712:IPR003594:IPR 000014:IPR001610:IPR005467:IPR000700; KEGG: rxy:Rxyl_0093 multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; PAS fold-4 domain protein; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; PAC repeat-containing protein; SPTR: B7AAT7 Histidine kinase; TIGRFAM: PAS sensor protein; PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like AT [...]
 
 0.858
Trad_0271
COGs: COG4585 Signal transduction histidine kinase; InterProIPR005467:IPR000014:IPR000700:IPR013767:IPR 011712:IPR003594:IPR001610; KEGG: hla:Hlac_3597 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; PAS fold domain protein; SMART: ATP-binding region ATPase domain protein; PAC repeat-containing protein; PAS domain containing protein; SPTR: B9LXB3 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PAS fo [...]
 
 0.848
Trad_2773
COGs: COG4585 Signal transduction histidine kinase; InterProIPR000014:IPR001610:IPR003594:IPR005467:IPR 000700:IPR013767:IPR011712; KEGG: hla:Hlac_3597 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; histidine kinase dimerisation and phosphoacceptor region; SMART: PAC repeat-containing protein; PAS domain containing protein; ATP-binding region ATPase domain protein; SPTR: B9LXB3 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PAS fo [...]
 
 0.845
Trad_2509
COGs: COG4585 Signal transduction histidine kinase; InterPro IPR011712:IPR003594:IPR018130; KEGG: xcv:XCV1260 two-component system sensor protein; PFAM: histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; SPTR: Q3BW72 Two-component system sensor protein; PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
   0.840
Trad_2667
Hypothetical protein; KEGG: mpo:Mpop_0713 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; SPTR: B1Z708 Aldehyde oxidase and xanthine dehydrogenase molybdopterin binding.
       0.837
Trad_2666
Peptidase M20; COGs: COG2195 Di- and tripeptidase; InterPro IPR002933:IPR011650:IPR001261; KEGG: ddr:Deide_21240 putative peptidase; PFAM: peptidase M20; peptidase dimerisation domain protein; SPTR: C1CYW8 Putative peptidase; PFAM: Peptidase family M20/M25/M40; Peptidase dimerisation domain.
       0.773
Trad_0729
Transcriptional regulator, LuxR family; COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterProIPR000014:IPR000792:IPR013767:IPR011991:IPR 016032; KEGG: mno:Mnod_6717 transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; PAS fold domain protein; SMART: regulatory protein LuxR; PAS domain containing protein; SPTR: B8IEY5 Transcriptional regulator, LuxR family; TIGRFAM: PAS sensor protein; PFAM: Bacterial regulatory proteins, luxR family; PAS fold; TIGRFAM: PAS domain S-box.
 
     0.763
Trad_2898
Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); COGs: COG5001 signal transduction protein containing a membrane domain an EAL and a GGDEF domain; InterProIPR000014:IPR000160:IPR003018:IPR001610:IPR 001633:IPR000700:IPR013656:IPR013767; KEGG: ddr:Deide_1p00099 putative diguanylate-cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; GAF domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: EAL domain protein; GGDEF domain containing protein; GAF domain protein; PAS domain containing protein; PAC repeat-containing protein; SPTR: C [...]
  
 
 0.589
Your Current Organism:
Truepera radiovictrix
NCBI taxonomy Id: 649638
Other names: T. radiovictrix DSM 17093, Truepera radiovictrix DSM 17093, Truepera radiovictrix RQ-24, Truepera radiovictrix str. DSM 17093, Truepera radiovictrix strain DSM 17093
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