STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Trad_2765KEGG: hypothetical protein; SPTR: B3LDC8 Putative uncharacterized protein. (52 aa)    
Predicted Functional Partners:
Trad_2766
COGs: COG0287 Prephenate dehydrogenase; InterPro IPR003099:IPR002912:IPR016040; KEGG: dge:Dgeo_1040 prephenate dehydrogenase; PFAM: Prephenate dehydrogenase; amino acid-binding ACT domain protein; SPTR: Q1IZJ5 Prephenate dehydrogenase; PFAM: Prephenate dehydrogenase; ACT domain.
       0.773
Trad_2767
KEGG: dge:Dgeo_0440 hypothetical protein; SPTR: Q1J191 Putative uncharacterized protein.
       0.773
Trad_2764
Peptidase C26; COGs: COG2071 glutamine amidotransferase; InterPro IPR017926:IPR011697; KEGG: tro:trd_1022 probable glutamine amidotransferase; PFAM: peptidase C26; SPTR: B9L018 Probable glutamine amidotransferase; PFAM: Peptidase C26.
       0.732
Trad_2763
Alcohol dehydrogenase zinc-binding domain protein; COGs: COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductase; InterPro IPR016040:IPR013154:IPR013149:IPR011032; KEGG: dra:DR_1061 NADPH quinone oxidoreductase, putative; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; SPTR: C1XGW7 Zn-dependent oxidoreductase, NADPH:quinone reductase; PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase.
       0.570
Trad_2768
Molybdenum cofactor biosynthesis protein A; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate.
       0.538
Your Current Organism:
Truepera radiovictrix
NCBI taxonomy Id: 649638
Other names: T. radiovictrix DSM 17093, Truepera radiovictrix DSM 17093, Truepera radiovictrix RQ-24, Truepera radiovictrix str. DSM 17093, Truepera radiovictrix strain DSM 17093
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.