STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Trad_2807KEGG: nca:Noca_3574 hypothetical protein; SPTR: A1SMN9 Putative uncharacterized protein. (144 aa)    
Predicted Functional Partners:
Trad_2803
Cytochrome c oxidase, subunit I; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.
       0.651
Trad_2804
COGs: COG1845 Heme/copper-type cytochrome/quinol oxidase subunit 3; InterPro IPR000298; KEGG: sti:Sthe_1584 cytochrome c oxidase subunit III; PFAM: cytochrome c oxidase subunit III; SPTR: D1C451 Cytochrome c oxidase subunit III; PFAM: Cytochrome c oxidase subunit III.
       0.651
Trad_2805
Cytochrome c class I; InterPro IPR009056:IPR003088; KEGG: dge:Dgeo_0810 cytochrome c, class I; PFAM: cytochrome c class I; SPTR: C1XTX3 Cytochrome c553; PFAM: Cytochrome c.
       0.651
Trad_2806
COGs: COG3336 membrane protein; InterPro IPR019108; KEGG: ote:Oter_2068 membrane protein-like protein; PFAM: Cytochrome c oxidase caa3-type, assembly factor CtaG-related; SPTR: C0AF21 Membrane protein-like protein; PFAM: Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG); TIGRFAM: cytochrome c oxidase assembly factor CtaG.
       0.651
Trad_2808
HAD-superfamily hydrolase, subfamily IA, variant 3; COGs: COG1011 hydrolase (HAD superfamily); InterPro IPR005833:IPR006402:IPR005834; KEGG: dge:Dgeo_1288 HAD family hydrolase; PFAM: Haloacid dehalogenase domain protein hydrolase; SPTR: Q1IYV0 HAD-superfamily hydrolase subfamily IA, variant 3; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED.
       0.542
Trad_2809
KEGG: dra:DR_2156 hypothetical protein; SPTR: Q9RSG8 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3208).
       0.542
Trad_2802
Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
       0.536
Your Current Organism:
Truepera radiovictrix
NCBI taxonomy Id: 649638
Other names: T. radiovictrix DSM 17093, Truepera radiovictrix DSM 17093, Truepera radiovictrix RQ-24, Truepera radiovictrix str. DSM 17093, Truepera radiovictrix strain DSM 17093
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