STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Trad_2856Nucleotide sugar dehydrogenase; COGs: COG1004 UDP-glucose 6-dehydrogenase; InterProIPR017476:IPR016040:IPR014027:IPR001732:IPR 014026:IPR008927; KEGG: dae:Dtox_2846 nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; PRIAM: UDP-glucose 6-dehydrogenase; SPTR: C8W2C7 Nucleotide sugar dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; UDP-glucose/GDP-mannose dehydrogenase family, central domain; UDP [...] (451 aa)    
Predicted Functional Partners:
Trad_2654
NAD-dependent epimerase/dehydratase; COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509:IPR008089:IPR016040; KEGG: cag:Cagg_0141 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: B8GCP2 NAD-dependent epimerase/dehydratase; PFAM: NAD dependent epimerase/dehydratase family.
 0.984
Trad_2868
dTDP-4-dehydrorhamnose 35-epimerase related protein; COGs: COG1898 dTDP-4-dehydrorhamnose 3 5-epimerase; InterPro IPR000888:IPR014710:IPR011051; KEGG: dra:DR_A0043 lipopolysaccharide biosynthesis protein, putative; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; SPTR: C1XU05 dTDP-4-dehydrorhamnose 3,5-epimerase-like enzyme; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase.
 
  
 0.969
Trad_2865
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
  
  
 0.966
Trad_1561
COGs: COG0562 UDP-galactopyranose mutase; InterPro IPR000172:IPR015899:IPR016040:IPR004379; KEGG: dra:DR_A0367 UDP-galactopyranose mutase; PFAM: UDP-galactopyranose mutase-like; glucose-methanol-choline oxidoreductase; PRIAM: UDP-galactopyranose mutase; SPTR: Q9RYF1 UDP-galactopyranose mutase; TIGRFAM: UDP-galactopyranose mutase; PFAM: UDP-galactopyranose mutase; TIGRFAM: UDP-galactopyranose mutase.
  
  
 0.942
Trad_1947
NAD-dependent epimerase/dehydratase; COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR016040:IPR001509; KEGG: syp:SYNPCC7002_A0847 NAD dependent epimerase/dehydratase family protein; PFAM: NAD-dependent epimerase/dehydratase; SPTR: C0XQ24 UDP-sulfoquinovose synthase; PFAM: NAD dependent epimerase/dehydratase family.
  
 0.939
Trad_2575
COGs: COG1087 UDP-glucose 4-epimerase; InterPro IPR001509:IPR016040:IPR005886; KEGG: sru:SRU_1772 UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: Q2S1P2 UDP-glucose 4-epimerase; TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: UDP-glucose-4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
 
 
 0.935
Trad_2869
dTDP-glucose 4,6-dehydratase; COGs: COG1088 dTDP-D-glucose 4 6-dehydratase; InterPro IPR002198:IPR005888:IPR016040:IPR001509; KEGG: sti:Sthe_0968 dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: D1C2D7 dTDP-glucose 4,6-dehydratase; TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
 0.930
Trad_2855
Lipopolysaccharide biosynthesis protein; COGs: COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis; InterPro IPR003856; KEGG: ttj:TTHA0641 hypothetical protein; PFAM: lipopolysaccharide biosynthesis protein; SPTR: Q5SKK2 Putative uncharacterized protein TTHA0641; PFAM: Chain length determinant protein.
     
 0.835
Trad_0989
COGs: COG1085 Galactose-1-phosphate uridylyltransferase; InterProIPR001937:IPR011151:IPR011146:IPR005849:IPR 005850; KEGG: esa:ESA_02587 galactose-1-phosphate uridylyltransferase; PFAM: galactose-1-phosphate uridyl transferase domain protein; PRIAM: UDP-glucose--hexose-1-phosphate uridylyltransferase; SPTR: B9XBB2 Galactose-1-phosphate uridylyltransferase; TIGRFAM: galactose-1-phosphate uridylyltransferase; PFAM: Galactose-1-phosphate uridyl transferase, C-terminal domain; Galactose-1-phosphate uridyl transferase, N-terminal domain; TIGRFAM: galactose-1-phosphate uridylyltransferase, f [...]
    
 0.818
Trad_0292
NAD-dependent epimerase/dehydratase; COGs: COG1087 UDP-glucose 4-epimerase; InterPro IPR001509:IPR008089:IPR016040; KEGG: app:CAP2UW1_3278 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: C7RIG9 NAD-dependent epimerase/dehydratase; PFAM: NAD dependent epimerase/dehydratase family.
  
 0.805
Your Current Organism:
Truepera radiovictrix
NCBI taxonomy Id: 649638
Other names: T. radiovictrix DSM 17093, Truepera radiovictrix DSM 17093, Truepera radiovictrix RQ-24, Truepera radiovictrix str. DSM 17093, Truepera radiovictrix strain DSM 17093
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