STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Trad_2874Cell division protein FtsK/SpoIIIE; COGs: COG1674 DNA segregation ATPase FtsK/SpoIIIE and related protein; InterPro IPR003593:IPR002543:IPR018541; KEGG: dge:Dgeo_1654 cell divisionFtsK/SpoIIIE; PFAM: cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; SMART: AAA ATPase; SPTR: Q1IXT5 Cell division protein FtsK; PFAM: Ftsk gamma domain; FtsK/SpoIIIE family; Belongs to the FtsK/SpoIIIE/SftA family. (1025 aa)    
Predicted Functional Partners:
Trad_2991
parB-like partition protein; COGs: COG1475 transcriptional regulator protein; InterPro IPR004437:IPR003115; KEGG: dge:Dgeo_2333 ParB-like protein partition proteins; PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease; SPTR: Q1IVV9 ParB-like partition protein; TIGRFAM: parB-like partition protein; PFAM: ParB-like nuclease domain; KorB domain; TIGRFAM: ParB-like partition proteins; Belongs to the ParB family.
 
  
 0.817
Trad_1811
Integrase family protein; COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104:IPR013762:IPR011010:IPR010998; KEGG: drm:Dred_0370 phage integrase family protein; PFAM: integrase family protein; SPTR: A4J1G5 Phage integrase family protein; PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family; Belongs to the 'phage' integrase family.
 
   
 0.718
mfd
Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.
 
   
 0.716
Trad_2992
Cobyrinic acid ac-diamide synthase; COGs: COG1192 ATPase involved in chromosome partitioning; InterPro IPR002586; KEGG: dge:Dgeo_2334 cobyrinic acid a,c-diamide synthase; PFAM: Cobyrinic acid ac-diamide synthase; SPTR: C1XFW3 Chromosome segregation ATPase; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain.
  
  
 0.699
dnaA
Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.
  
  
 0.689
Trad_1609
Polypeptide-transport-associated domain protein FtsQ-type; COGs: COG1589 Cell division septal protein; InterPro IPR013685; KEGG: dge:Dgeo_1633 cell division protein FtsQ; PFAM: Polypeptide-transport-associated domain protein FtsQ-type; SPTR: Q1IXV6 Cell division protein FtsQ; PFAM: POTRA domain, FtsQ-type.
  
 
 0.683
Trad_0550
DNA internalization-related competence protein ComEC/Rec2; COGs: COG2333 hydrolase (metallo-beta-lactamase superfamily); InterPro IPR004477:IPR004797; KEGG: dge:Dgeo_1579 DNA internalization-related competence protein ComEC/Rec2; PFAM: ComEC/Rec2-related protein; SPTR: Q1IY10 DNA internalization-related competence protein ComEC/Rec2; TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: Competence protein; Metallo-beta-lactamase superfamily; TIGRFAM: ComEC/Rec2-related protein; DNA internalization-related competence protein ComEC/Rec2.
 
  
 0.681
rnj
RNA-metabolising metallo-beta-lactamase; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay.
    0.680
mraZ
MraZ protein; COGs: COG2001 conserved hypothetical protein; InterPro IPR020603:IPR003444; KEGG: ddr:Deide_08661 putative MraZ protein; PFAM: MraZ domain; SPTR: C1D1L7 Protein mraZ; TIGRFAM: MraZ protein; PFAM: MraZ protein; TIGRFAM: mraZ protein; Belongs to the MraZ family.
 
  
 0.664
Trad_1601
Peptidoglycan glycosyltransferase; COGs: COG0768 Cell division protein FtsI/penicillin-binding protein 2; InterPro IPR001460:IPR012338:IPR005311; KEGG: ddr:Deide_08690 putative peptidoglycan glycosyltransferase, precursor; PFAM: penicillin-binding protein transpeptidase; PRIAM: Peptidoglycan glycosyltransferase; SPTR: C1D1M0 Putative Peptidoglycan glycosyltransferase,; PFAM: Penicillin binding protein transpeptidase domain.
 
 
 0.660
Your Current Organism:
Truepera radiovictrix
NCBI taxonomy Id: 649638
Other names: T. radiovictrix DSM 17093, Truepera radiovictrix DSM 17093, Truepera radiovictrix RQ-24, Truepera radiovictrix str. DSM 17093, Truepera radiovictrix strain DSM 17093
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