STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Trad_2892COGs: COG1175 ABC-type sugar transport systems permease components; InterPro IPR000515; KEGG: dge:Dgeo_2869 binding-protein-dependent transport systems inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: Q1J2I6 ABC-type sugar transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component. (309 aa)    
Predicted Functional Partners:
Trad_2893
COGs: COG0395 ABC-type sugar transport system permease component; InterPro IPR000515; KEGG: dge:Dgeo_2868 binding-protein-dependent transport systems inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: B4WTN4 ABC transporter, permease protein, putative; PFAM: Binding-protein-dependent transport system inner membrane component.
  0.994
Trad_2891
Extracellular solute-binding protein family 1; COGs: COG1653 ABC-type sugar transport system periplasmic component; InterPro IPR006059; KEGG: csa:Csal_0633 extracellular solute-binding protein; PFAM: extracellular solute-binding protein family 1; SPTR: Q1QZW3 Extracellular solute-binding protein, family 1; PFAM: Bacterial extracellular solute-binding protein.
  0.989
Trad_2351
ABC transporter related protein; COGs: COG3839 ABC-type sugar transport systems ATPase components; InterProIPR008995:IPR003593:IPR003439:IPR013611:IPR 017871; KEGG: tth:TTC0211 sugar-binding transport ATP-binding protein; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; SPTR: C1XQ97 Carbohydrate ABC transporter ATP-binding protein, CUT1 family; PFAM: ABC transporter; TOBE domain.
 
 0.949
Trad_2182
Extracellular solute-binding protein family 1; COGs: COG1653 ABC-type sugar transport system periplasmic component; InterPro IPR006059; KEGG: dge:Dgeo_2821 extracellular solute-binding protein; PFAM: extracellular solute-binding protein family 1; SPTR: Q1J2N4 ABC-type sugar transport system, periplasmic component; PFAM: Bacterial extracellular solute-binding protein.
   0.853
Trad_2184
Binding-protein-dependent transport systems inner membrane component; COGs: COG0395 ABC-type sugar transport system permease component; InterPro IPR000515; KEGG: ddr:Deide_1p01620 putative sugar ABC transporter, permease component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C1D2H3 Putative sugar ABC transporter, permease component; PFAM: Binding-protein-dependent transport system inner membrane component.
   0.847
Trad_2894
Alcohol dehydrogenase GroES domain protein; COGs: COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenase; InterProIPR002328:IPR013154:IPR013149:IPR011032:IPR 016040; KEGG: ttr:Tter_2269 alcohol dehydrogenase GroES domain protein; PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; SPTR: D1CHE7 Alcohol dehydrogenase GroES domain protein; PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase; TIGRFAM: 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
       0.803
Trad_1200
COGs: COG3833 ABC-type maltose transport systems permease component; InterPro IPR000515; KEGG: ttj:TTHA1650 maltose ABC transporter, permease protein; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: Q5SHT0 Maltose ABC transporter, permease protein; PFAM: Binding-protein-dependent transport system inner membrane component.
 
 0.788
Trad_2041
COGs: COG3833 ABC-type maltose transport systems permease component; InterPro IPR000515; KEGG: ttj:TTHA1650 maltose ABC transporter, permease protein; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: Q5SHT0 Maltose ABC transporter, permease protein; PFAM: Binding-protein-dependent transport system inner membrane component.
 
 0.783
Trad_2895
Alcohol dehydrogenase GroES domain protein; COGs: COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenase; InterProIPR002328:IPR013154:IPR013149:IPR011032:IPR 016040; KEGG: sorbitol dehydrogenase, putative; PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; SPTR: B7QAN4 Sorbitol dehydrogenase, putative; PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase; TIGRFAM: 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
 
     0.770
Trad_0616
COGs: COG0395 ABC-type sugar transport system permease component; InterPro IPR000515; KEGG: hor:Hore_20850 binding-protein-dependent transport systems inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: B8CZX8 Binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport system inner membrane component.
   0.762
Your Current Organism:
Truepera radiovictrix
NCBI taxonomy Id: 649638
Other names: T. radiovictrix DSM 17093, Truepera radiovictrix DSM 17093, Truepera radiovictrix RQ-24, Truepera radiovictrix str. DSM 17093, Truepera radiovictrix strain DSM 17093
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