STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Trad_2963Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; COGs: COG3347 conserved hypothetical protein; InterProIPR002347:IPR013454:IPR016040:IPR001303:IPR 002198; KEGG: cag:Cagg_3316 rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; PFAM: class II aldolase/adducin family protein; short-chain dehydrogenase/reductase SDR; SPTR: B8G8B0 Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; TIGRFAM: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; PFAM: Class II Aldolase and Adducin N-terminal domain; short chain dehydrogenase; TIGRFAM: rhamnulose-1-phosphate aldolase/alcohol dehy [...] (727 aa)    
Predicted Functional Partners:
Trad_2967
COGs: COG4952 sugar isomerase; InterPro IPR013457:IPR013022:IPR012307; KEGG: dge:Dgeo_2455 rhamnose isomerase-related protein; PFAM: Xylose isomerase domain protein TIM barrel; SPTR: Q1J3P5 Rhamnose isomerase related; TIGRFAM: L-rhamnose isomerase; PFAM: L-rhamnose isomerase (RhaA); TIGRFAM: L-rhamnose isomerase, Streptomyces subtype.
 
     0.953
Trad_2968
Transcriptional regulator, DeoR family; COGs: COG1349 Transcriptional regulators of sugar metabolism; InterPro IPR001034:IPR014036; KEGG: ddr:Deide_3p01530 putative transcriptional regulator, DeoR family; PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR; SPTR: Q1J3P4 Transcriptional regulator, DeoR family; PFAM: Bacterial regulatory proteins, deoR family; DeoR-like helix-turn-helix domain.
  
  
 0.860
Trad_2142
Protein of unknown function DUF718; COGs: COG3254 conserved hypothetical protein; InterPro IPR008000; KEGG: chl:Chy400_2462 protein of unknown function DUF718; PFAM: protein of unknown function DUF718; SPTR: B9LIR2 Putative uncharacterized protein; PFAM: Domain of unknown function (DUF718).
 
  
 0.833
Trad_2965
Iron-sulfur cluster binding protein; COGs: COG1139 conserved hypothetical protein containing a ferredoxin-like domain; InterProIPR017900:IPR004452:IPR012285:IPR003741:IPR 009051; KEGG: fal:FRAAL3348 putative Fe4-S4 ferredoxin; PFAM: protein of unknown function DUF162; SPTR: Q0RKG6 Putative Fe4-S4 ferredoxin; TIGRFAM: iron-sulfur cluster binding protein; PFAM: Domain of unknown function (DUF3390); Uncharacterised ACR, YkgG family COG1556; TIGRFAM: 2[4Fe-4S] protein, putative.
   
   0.815
Trad_2964
Protein of unknown function DUF162; COGs: COG1556 conserved hypothetical protein; InterPro IPR003741; KEGG: rop:ROP_32740 hypothetical protein; PFAM: protein of unknown function DUF162; SPTR: Q0SB02 Putative uncharacterized protein; PFAM: Uncharacterised ACR, YkgG family COG1556.
       0.793
Trad_2966
COGs: COG0247 Fe-S oxidoreductase; InterPro IPR004017; KEGG: sro:Sros_7370 cysteine-rich domain protein; PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; SPTR: C4E3W3 Fe-S oxidoreductase; PFAM: Cysteine-rich domain.
  
    0.792
Trad_1713
Carbohydrate kinase, FGGY; COGs: COG1070 Sugar (pentulose and hexulose) kinase; InterPro IPR018484; KEGG: cag:Cagg_3317 carbohydrate kinase FGGY; PFAM: Carbohydrate kinase, FGGY-like; SPTR: B8G8B1 Carbohydrate kinase FGGY; PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain.
 
 0.737
Trad_1140
Putative secreted solute-binding lipoprotein; COGs: COG1879 ABC-type sugar transport system periplasmic component; KEGG: rxy:Rxyl_1681 putative secreted solute-binding lipoprotein; SPTR: C1XTQ0 Monosaccharide ABC transporter substrate-binding protein, CUT2 family; PFAM: family.
 
     0.682
Trad_1712
Class II aldolase/adducin family protein; COGs: COG3347 conserved hypothetical protein; InterPro IPR001303; KEGG: ote:Oter_3319 class II aldolase/adducin family protein; PFAM: class II aldolase/adducin family protein; SPTR: B1ZTE4 Class II aldolase/adducin family protein; PFAM: Class II Aldolase and Adducin N-terminal domain.
  
     0.661
Trad_2969
Thioredoxin; COGs: COG3118 Thioredoxin domain-containing protein; InterProIPR006662:IPR017937:IPR005746:IPR012335:IPR 017936:IPR013766:IPR012336; KEGG: dge:Dgeo_2518 thioredoxin; PFAM: Thioredoxin domain; SPTR: Q1J3I2 Thioredoxin; TIGRFAM: thioredoxin; PFAM: Thioredoxin; TIGRFAM: thioredoxin; Belongs to the thioredoxin family.
  
 
 0.560
Your Current Organism:
Truepera radiovictrix
NCBI taxonomy Id: 649638
Other names: T. radiovictrix DSM 17093, Truepera radiovictrix DSM 17093, Truepera radiovictrix RQ-24, Truepera radiovictrix str. DSM 17093, Truepera radiovictrix strain DSM 17093
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