STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Trad_2965Iron-sulfur cluster binding protein; COGs: COG1139 conserved hypothetical protein containing a ferredoxin-like domain; InterProIPR017900:IPR004452:IPR012285:IPR003741:IPR 009051; KEGG: fal:FRAAL3348 putative Fe4-S4 ferredoxin; PFAM: protein of unknown function DUF162; SPTR: Q0RKG6 Putative Fe4-S4 ferredoxin; TIGRFAM: iron-sulfur cluster binding protein; PFAM: Domain of unknown function (DUF3390); Uncharacterised ACR, YkgG family COG1556; TIGRFAM: 2[4Fe-4S] protein, putative. (477 aa)    
Predicted Functional Partners:
Trad_2964
Protein of unknown function DUF162; COGs: COG1556 conserved hypothetical protein; InterPro IPR003741; KEGG: rop:ROP_32740 hypothetical protein; PFAM: protein of unknown function DUF162; SPTR: Q0SB02 Putative uncharacterized protein; PFAM: Uncharacterised ACR, YkgG family COG1556.
 
 0.999
Trad_2966
COGs: COG0247 Fe-S oxidoreductase; InterPro IPR004017; KEGG: sro:Sros_7370 cysteine-rich domain protein; PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; SPTR: C4E3W3 Fe-S oxidoreductase; PFAM: Cysteine-rich domain.
 
 0.998
Trad_0463
FAD linked oxidase domain protein; COGs: COG0277 FAD/FMN-containing dehydrogenase; InterProIPR017900:IPR006094:IPR004113:IPR004017:IPR 017896:IPR016166:IPR016164:IPR009051:IPR016167; KEGG: rca:Rcas_0560 FAD linked oxidase domain-containing protein; PFAM: FAD linked oxidase domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; SPTR: A7NGU3 FAD linked oxidase domain protein; PFAM: FAD binding domain; FAD linked oxidases, C-terminal domain.
  
 
 0.833
Trad_1499
L-lactate permease; Transports L-lactate across the membrane. Can also transport D-lactate and glycolate; Belongs to the lactate permease family.
 
  
 0.817
Trad_2963
Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; COGs: COG3347 conserved hypothetical protein; InterProIPR002347:IPR013454:IPR016040:IPR001303:IPR 002198; KEGG: cag:Cagg_3316 rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; PFAM: class II aldolase/adducin family protein; short-chain dehydrogenase/reductase SDR; SPTR: B8G8B0 Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; TIGRFAM: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; PFAM: Class II Aldolase and Adducin N-terminal domain; short chain dehydrogenase; TIGRFAM: rhamnulose-1-phosphate aldolase/alcohol dehy [...]
   
   0.815
Trad_1570
Protein of unknown function DUF224 cysteine-rich region domain protein; COGs: COG0247 Fe-S oxidoreductase; InterProIPR017900:IPR001450:IPR004017:IPR012285:IPR 009051:IPR017896:IPR012257; KEGG: ddr:Deide_14060 putative glycolate oxidase iron-sulfur subunit; PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: C1XVX4 Fe-S oxidoreductase; PFAM: Cysteine-rich domain.
 
 
 0.814
Trad_2967
COGs: COG4952 sugar isomerase; InterPro IPR013457:IPR013022:IPR012307; KEGG: dge:Dgeo_2455 rhamnose isomerase-related protein; PFAM: Xylose isomerase domain protein TIM barrel; SPTR: Q1J3P5 Rhamnose isomerase related; TIGRFAM: L-rhamnose isomerase; PFAM: L-rhamnose isomerase (RhaA); TIGRFAM: L-rhamnose isomerase, Streptomyces subtype.
       0.794
Trad_2968
Transcriptional regulator, DeoR family; COGs: COG1349 Transcriptional regulators of sugar metabolism; InterPro IPR001034:IPR014036; KEGG: ddr:Deide_3p01530 putative transcriptional regulator, DeoR family; PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR; SPTR: Q1J3P4 Transcriptional regulator, DeoR family; PFAM: Bacterial regulatory proteins, deoR family; DeoR-like helix-turn-helix domain.
       0.781
Trad_0180
Protein of unknown function DUF224 cysteine-rich region domain protein; COGs: COG0247 Fe-S oxidoreductase; InterProIPR017896:IPR004017:IPR009051:IPR012285:IPR 017900; KEGG: dge:Dgeo_0874 protein of unknown function DUF224, cysteine-rich region; PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; SPTR: Q1J008 Fe-S oxidoreductase subunit (Cysteine-rich domain domain enzyme); PFAM: Cysteine-rich domain.
  
 
 0.695
Trad_1939
4Fe-4S ferredoxin iron-sulfur binding domain protein; InterPro IPR017896:IPR001450:IPR017900; KEGG: ttj:TTHA0389 polyferredoxin; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: Q5SLA4 Polyferredoxin; PFAM: 4Fe-4S binding domain.
  
   0.594
Your Current Organism:
Truepera radiovictrix
NCBI taxonomy Id: 649638
Other names: T. radiovictrix DSM 17093, Truepera radiovictrix DSM 17093, Truepera radiovictrix RQ-24, Truepera radiovictrix str. DSM 17093, Truepera radiovictrix strain DSM 17093
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