STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADI15382.1DNA photolyase FAD-binding protein; COGs: COG0415 Deoxyribodipyrimidine photolyase; InterProIPR002081:IPR005101:IPR006050:IPR014729:IPR 018394; KEGG: chl:Chy400_0772 deoxyribodipyrimidine photo-lyase; PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; SPTR: B9LKE5 Deoxyribodipyrimidine photo-lyase; tmRNA as predicted by Rfam (RF00023), score 176.30; PFAM: FAD binding domain of DNA photolyase; DNA photolyase. (486 aa)    
Predicted Functional Partners:
Trad_2750
Amine oxidase; COGs: COG3380 NAD/FAD-dependent oxidoreductase; InterPro IPR000759:IPR002937; KEGG: gvi:glr2878 hypothetical protein; PFAM: amine oxidase; SPTR: Q7NCU8 Glr2878 protein; PFAM: Flavin containing amine oxidoreductase.
 
     0.536
Trad_0978
beta-Ig-H3/fasciclin; COGs: COG2335 Secreted and surface protein containing fasciclin-like repeats; InterPro IPR000782:IPR010895; KEGG: sru:SRU_2209 osteoblast specific factor 2-related protein; PFAM: beta-Ig-H3/fasciclin; CHRD domain containing protein; SMART: beta-Ig-H3/fasciclin; CHRD domain containing protein; SPTR: B5K4P0 Beta-Ig-H3/fasciclin; PFAM: CHRD domain; Fasciclin domain.
 
  
 0.484
Trad_2702
beta-Ig-H3/fasciclin; COGs: COG2335 Secreted and surface protein containing fasciclin-like repeats; InterPro IPR000782; KEGG: npu:Npun_F2532 beta-Ig-H3/fasciclin; PFAM: beta-Ig-H3/fasciclin; SMART: beta-Ig-H3/fasciclin; SPTR: B4B4J9 Beta-Ig-H3/fasciclin; PFAM: Fasciclin domain.
 
  
 0.477
Trad_2241
COGs: COG1233 Phytoene dehydrogenase and related protein; InterPro IPR006076:IPR014105; KEGG: ddr:Deide_2p01180 putative FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; SPTR: C1XLI5 Phytoene dehydrogenase-like oxidoreductase; TIGRFAM: phytoene desaturase; PFAM: FAD dependent oxidoreductase; TIGRFAM: phytoene desaturase.
 
  
 0.476
Trad_2664
Regulatory protein MerR; COGs: COG5012 cobalamin binding protein; InterPro IPR000551:IPR006158:IPR009061; KEGG: chl:Chy400_2902 regulatory protein MerR; PFAM: regulatory protein MerR; cobalamin B12-binding domain protein; SMART: regulatory protein MerR; SPTR: C1XVR4 Transcriptional regulator, MerR family; manually curated; PFAM: MerR family regulatory protein; B12 binding domain.
 
  
 0.464
Trad_1205
beta-Ig-H3/fasciclin; COGs: COG2335 Secreted and surface protein containing fasciclin-like repeats; InterPro IPR000782; KEGG: sru:SRU_0261 osteoblast specific factor 2-related protein; PFAM: beta-Ig-H3/fasciclin; SMART: beta-Ig-H3/fasciclin; SPTR: C1XW13 Secreted/surface protein with fasciclin-like repeats; PFAM: Fasciclin domain.
 
  
 0.459
Trad_1135
COGs: COG0123 Deacetylase including yeast histone deacetylase and acetoin utilization protein; InterPro IPR000286; KEGG: dge:Dgeo_1420 histone deacetylase superfamily protein; PFAM: histone deacetylase superfamily; PRIAM: Histone deacetylase; SPTR: Q1IYG9 Histone deacetylase superfamily; PFAM: Histone deacetylase domain.
 
 
 0.451
Trad_2177
Uncharacterized conserved protein UCP037205; InterPro IPR017136; KEGG: jan:Jann_1844 hypothetical protein; PFAM: Uncharacterised conserved protein UCP037205; SPTR: B7RPF2 Putative uncharacterized protein; manually curated; PFAM: Uncharacterized protein conserved in bacteria (DUF2256).
 
     0.440
Trad_2193
COGs: COG1233 Phytoene dehydrogenase and related protein; InterPro IPR002937:IPR014105:IPR008150; KEGG: hau:Haur_3185 zeta-phytoene desaturase; PFAM: amine oxidase; SPTR: A9B6V4 Zeta-phytoene desaturase; TIGRFAM: phytoene desaturase; PFAM: Flavin containing amine oxidoreductase; TIGRFAM: phytoene desaturase.
 
  
 0.412
Trad_2248
COGs: COG1562 Phytoene/squalene synthetase; InterPro IPR008949:IPR002060:IPR019845; KEGG: dge:Dgeo_0523 squalene/phytoene synthase; PFAM: Squalene/phytoene synthase; PRIAM: Phytoene synthase; SPTR: Q1J109 Phytoene synthase, CrtB; PFAM: Squalene/phytoene synthase.
 
   
 0.400
Your Current Organism:
Truepera radiovictrix
NCBI taxonomy Id: 649638
Other names: T. radiovictrix DSM 17093, Truepera radiovictrix DSM 17093, Truepera radiovictrix RQ-24, Truepera radiovictrix str. DSM 17093, Truepera radiovictrix strain DSM 17093
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