STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU29343.1RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: bsu:BSU26840 RNA polymerase sigma factor SigZ; TIGRFAM: RNA polymerase sigma factor, SigZ family; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; Belongs to the sigma-70 factor family. ECF subfamily. (191 aa)    
Predicted Functional Partners:
ADU29133.1
RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: bwe:BcerKBAB4_1655 RNA polymerase sigma factor SigW; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.755
ADU29226.1
RNA polymerase, sigma 32 subunit, RpoH; Manually curated; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; KEGG: eat:EAT1b_1768 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 4 domain protein; sigma-70 region 2 domain protein.
  
     0.731
ADU29689.1
RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: bha:BH1615 RNA polymerase sigma factor Y; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.720
ADU32088.1
RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: ctc:CTC00608 RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.716
ADU28739.1
KEGG: aoe:Clos_0694 ECF subfamily RNA polymerase sigma-24 factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein.
  
     0.553
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.456
ADU29344.1
Germination protein, Ger(x)C family; KEGG: bcl:ABC3493 spore germination protein KC; TIGRFAM: germination protein, Ger(x)C family; PFAM: spore germination B3 GerAC family protein.
  
    0.444
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.438
ADU29345.1
KEGG: bpf:BpOF4_14215 spore germination protein GerKB; TIGRFAM: spore germination protein; PFAM: Spore germination protein.
       0.436
ADU29346.1
PFAM: GerA spore germination protein; KEGG: btl:BALH_0572 spore germination protein KA.
       0.436
Your Current Organism:
Bacillus cellulosilyticus
NCBI taxonomy Id: 649639
Other names: B. cellulosilyticus DSM 2522, Bacillus cellulosilyticus DSM 2522, Bacillus cellulosilyticus str. DSM 2522, Bacillus cellulosilyticus strain DSM 2522, Bacillus sp. (STRAIN N-4), Bacillus sp. ATCC 21833, Bacillus sp. N-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.