STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU29838.1TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; PFAM: Soluble ligand binding domain; KEGG: gwc:GWCH70_2451 competence protein ComEA helix-hairpin-helix repeat protein; SMART: Helix-hairpin-helix DNA-binding class 1. (201 aa)    
Predicted Functional Partners:
ADU29840.1
KEGG: bha:BH1335 late competence operon required for DNA binding and uptake; TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein.
 
  
 0.789
ADU31871.1
Helicase domain protein; KEGG: bmq:BMQ_5117 ComFA competence protein; PFAM: helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicase; helicase domain protein.
   
  
 0.779
ADU29938.1
PFAM: Type II secretion system F domain; KEGG: type II secretion system F domain protein.
  
  
 0.710
ADU31344.1
PFAM: Type II secretion system F domain; KEGG: afl:Aflv_0626 type II secretory pathway component PulF.
  
  
 0.707
ADU31342.1
KEGG: bpf:BpOF4_02855 peptidase A24A domain protein; PFAM: peptidase A24A domain protein; peptidase A24A prepilin type IV.
  
  
 0.698
ADU29839.1
ComE operon protein 2; KEGG: bha:BH1334 late competence operon required for DNA binding and uptake; TIGRFAM: ComE operon protein 2; PFAM: CMP/dCMP deaminase zinc-binding.
  
    0.669
ADU29837.1
KEGG: comER; ComE operon protein; PFAM: NADP oxidoreductase coenzyme F420-dependent.
  
  
 0.659
ADU29937.1
PFAM: type II secretion system protein E; KEGG: bmq:BMQ_4495 ComG operon protein.
  
  
 0.627
ADU31346.1
KEGG: afl:Aflv_0624 type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase.
  
  
 0.627
ADU29940.1
Competence protein ComGC-like protein; Required for transformation and DNA binding.
   
  
 0.622
Your Current Organism:
Bacillus cellulosilyticus
NCBI taxonomy Id: 649639
Other names: B. cellulosilyticus DSM 2522, Bacillus cellulosilyticus DSM 2522, Bacillus cellulosilyticus str. DSM 2522, Bacillus cellulosilyticus strain DSM 2522, Bacillus sp. (STRAIN N-4), Bacillus sp. ATCC 21833, Bacillus sp. N-4
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