STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEI55330.1Diguanylate cyclase (GGDEF) domain-containing protein. (423 aa)    
Predicted Functional Partners:
SEI51408.1
PAS domain S-box-containing protein.
 0.998
SEI52822.1
PAS domain S-box-containing protein.
 0.998
SEI60460.1
PAS domain S-box-containing protein.
 0.998
SEI37353.1
PAS domain S-box-containing protein.
  
 0.997
SEI41734.1
Hypothetical protein.
 
 0.997
SEI51393.1
HPt (histidine-containing phosphotransfer) domain-containing protein.
  
 0.997
SEI63845.1
PAS domain S-box-containing protein.
 
 0.997
SEI37226.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
 
0.996
SEI63833.1
Signal transduction histidine kinase.
 
 0.996
SEI79558.1
Two-component system, NarL family, sensor histidine kinase BarA.
 0.996
Your Current Organism:
Pseudospirillum japonicum
NCBI taxonomy Id: 64971
Other names: ATCC 19191, CIP 103373, DSM 7165, IFO 15446, LMG 10146, LMG:10146, NBRC 15446, Oceanospirillum japonicum, P. japonicum, Spirillum japonicum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.