STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEI67277.1General secretion pathway protein F. (405 aa)    
Predicted Functional Partners:
SEI67291.1
General secretion pathway protein E.
 
 0.997
SEI41152.1
Type IV pilus assembly protein PilB.
 
 0.990
SEI46657.1
General secretion pathway protein G.
 
  
 0.947
SEI41128.1
Leader peptidase (prepilin peptidase) / N-methyltransferase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.896
SEI47931.1
Type IV pilus assembly protein PilQ.
   
 
 0.853
SEI47958.1
Type IV pilus assembly protein PilO.
   
 
 0.853
SEI47961.1
Type IV pilus assembly protein PilN.
   
 
 0.853
SEI47984.1
Type IV pilus assembly protein PilM.
   
 
 0.853
SEI47939.1
Type IV pilus assembly protein PilP.
    
 
 0.844
SEI46772.1
General secretion pathway protein D.
 
  
 0.835
Your Current Organism:
Pseudospirillum japonicum
NCBI taxonomy Id: 64971
Other names: ATCC 19191, CIP 103373, DSM 7165, IFO 15446, LMG 10146, LMG:10146, NBRC 15446, Oceanospirillum japonicum, P. japonicum, Spirillum japonicum
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.