STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEI93369.1Cytidyltransferase-like domain-containing protein. (504 aa)    
Predicted Functional Partners:
SEI44529.1
D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase.
 
  
 0.843
gmhA
D-sedoheptulose 7-phosphate isomerase; Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate.
 
  
 0.784
SEI55523.1
D-lactate dehydrogenase.
    
  0.775
SEI88403.1
Heptosyltransferase I.
 
  
 0.717
SEI91519.1
ADP-heptose:LPS heptosyltransferase.
 
  
 0.657
SEI50768.1
Heptosyltransferase-2.
 
  
 0.651
hldD
ADP-L-glycero-D-manno-heptose 6-epimerase; Catalyzes the interconversion between ADP-D-glycero-beta-D- manno-heptose and ADP-L-glycero-beta-D-manno-heptose via an epimerization at carbon 6 of the heptose; Belongs to the NAD(P)-dependent epimerase/dehydratase family. HldD subfamily.
 
 
 0.638
SEI48520.1
Heptosyltransferase-2.
 
  
 0.615
SEI49545.1
ADP-heptose:LPS heptosyltransferase.
 
  
 0.598
SEI46593.1
Glycosyltransferase involved in cell wall bisynthesis.
 
  
 0.582
Your Current Organism:
Pseudospirillum japonicum
NCBI taxonomy Id: 64971
Other names: ATCC 19191, CIP 103373, DSM 7165, IFO 15446, LMG 10146, LMG:10146, NBRC 15446, Oceanospirillum japonicum, P. japonicum, Spirillum japonicum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.